New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221943 =345 (1.030)4 (0.010) 2/188 39.1 0.01 coding (714/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 1176 (3.290)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

AGCCCACG......................................................................................................  <  NC_014034/221950‑221943
..............ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAC  <  NC_014034/222062‑221967
        ||||||                                                                                                
atCCCACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAT           <  1:5713775/99‑1 (MQ=2)
   cgACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCGGACCGATCCC        >  2:3346237/3‑101 (MQ=9)
    gACGGACCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCA       <  2:5918926/100‑1 (MQ=2)
     ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCAC      >  1:1131509/1‑101 (MQ=0)
         gCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAC  <  2:699336/100‑1 (MQ=18)
        ||||||                                                                                                
AGCCCACG......................................................................................................  <  NC_014034/221950‑221943
..............ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAC  <  NC_014034/222062‑221967

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG