New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =395 (1.270)45 (0.140) 23/174 22.6 0.11 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 349 (0.980)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC.................................................................  <  NC_014034/222051‑221953
................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222128‑222077
                                                                                                   |||||||||||||                                                    
CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGG                                                                 >  2:2794577/1‑101 (MQ=0)
     cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                            <  1:4933803/99‑1 (MQ=9)
       ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC                                                          >  2:5945131/1‑101 (MQ=12)
       ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC                                                          >  1:3603587/1‑101 (MQ=12)
        CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                         <  1:2934188/101‑1 (MQ=2)
         ggccCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                        <  2:1807730/97‑1 (MQ=0)
         GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                        >  2:3226389/1‑101 (MQ=2)
         GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                        <  1:6661301/101‑1 (MQ=0)
          gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGc                                                       >  2:2046597/4‑100 (MQ=2)
          gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                       >  1:4553209/4‑101 (MQ=0)
          gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                       >  2:6122379/4‑101 (MQ=0)
              cgccccgcCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                   <  1:6946521/93‑1 (MQ=0)
              CGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                   <  1:4930081/101‑1 (MQ=0)
              CGACAGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                   <  1:5311154/101‑1 (MQ=0)
               GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCA                                                  >  1:882897/1‑101 (MQ=0)
               GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGCTCCGACGGACCCGACCGATCCCA                                                  >  1:2526376/1‑101 (MQ=0)
               GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGCCCGATCCCA                                                  >  2:4250901/1‑101 (MQ=0)
                ACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                 <  1:6805233/101‑1 (MQ=0)
                 CCGGTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGGCGGACCCGACCGATCCCACG                                                >  1:5611050/1‑101 (MQ=2)
                  CGATCCCACGGCCCCGACCGATCCCACGGATCCGACCGACCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGG                                               <  1:534371/101‑1 (MQ=0)
                   GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGATCCGACGGACCCGACCGAGCCCACGGA                                              >  2:6413165/1‑101 (MQ=2)
                   GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCAAACGGc                                              >  2:713400/1‑100 (MQ=2)
                    acCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAC                                             <  1:5564775/99‑1 (MQ=2)
                    ATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGAC                                             >  2:6438996/1‑101 (MQ=2)
                     TCCCACGGACCCGACCGAGCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACC                                            <  1:2960802/101‑1 (MQ=9)
                      CCCACGGCCCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                           <  1:3938337/101‑1 (MQ=255)
                       CCACGGCCCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                          <  1:2659962/101‑1 (MQ=255)
                        ccCGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                         <  2:3905618/99‑1 (MQ=255)
                         ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAGCCCACGGACCCGAC                                        >  2:6652116/1‑101 (MQ=255)
                         ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCGAC                                        >  1:3739163/1‑101 (MQ=255)
                           ctcCCCTACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                                      <  2:4273165/98‑1 (MQ=2)
                           GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGccgg                                      >  2:3169570/1‑97 (MQ=255)
                           GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAGCCCACGGACCCGACgg                                      >  2:4215174/1‑99 (MQ=255)
                            GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGGCCCGACCGATCCCACGGAACCGACCGA                                     >  2:6543585/1‑101 (MQ=2)
                              CCCGACCGATCCCACGGCCCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATC                                   <  1:3909375/101‑1 (MQ=2)
                                CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCC                                 <  1:6411304/101‑1 (MQ=14)
                                      ATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGgc                           >  1:2059569/1‑99 (MQ=255)
                                        CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAACCCACGGCTCC                         >  2:3911985/1‑101 (MQ=2)
                                          cccgtacCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCca                       <  1:4698923/94‑3 (MQ=2)
                                            CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAACCCACC                     >  2:6660959/1‑101 (MQ=2)
                                                  cggcgGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCg               <  2:3569390/96‑2 (MQ=9)
                                                  CGACCGAACCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCg               <  1:3055550/101‑2 (MQ=255)
                                                   GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGATCCGACCGATCCCA              >  2:45704/1‑101 (MQ=12)
                                                   GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCAACCGATCtga              >  1:4053280/1‑98 (MQ=0)
                                                    ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGATCCCACGGATCCCACCGATCCGAC             >  2:4929829/1‑101 (MQ=0)
                                                     CCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACG            <  2:5228489/101‑1 (MQ=0)
                                                      gGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG           >  1:4541797/2‑101 (MQ=14)
                                                      CGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG           <  1:4119702/101‑1 (MQ=2)
                                                       GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCgcagga          >  1:6932484/1‑95 (MQ=9)
                                                        ATCCCACGGACCCGACCGATGCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGAC         <  1:4381833/101‑1 (MQ=0)
                                                         gccgcCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACC        <  2:2997439/96‑1 (MQ=0)
                                                          CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC       <  1:786197/101‑1 (MQ=2)
                                                          CCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC       <  2:1343939/101‑1 (MQ=2)
                                                           CCACGGACCCGACCCATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCG      <  2:273984/101‑1 (MQ=0)
                                                               GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGCCGGACCCGACcg  >  2:45302/1‑99 (MQ=2)
                                                               GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGACCCGACGGACCCGACcg  >  1:5353767/1‑99 (MQ=2)
                                                                                                   |||||||||||||                                                    
CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC.................................................................  <  NC_014034/222051‑221953
................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222128‑222077

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 21 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG