New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =432 (1.460)69 (0.230) 2/166 37.0 0.08 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222045 1246 (3.480)coding (612/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC....................................................................................................  <  NC_014034/222072‑221956
....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCC  <  NC_014034/222045‑221946
                                                                                                                                                                                                                         
                       acCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAT                                                                                               <  1:42954/99‑1 (MQ=9)
                         CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                             >  1:6588518/1‑101 (MQ=9)
                         CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                             <  2:2405972/101‑1 (MQ=12)
                         CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                             <  1:4709201/101‑1 (MQ=12)
                          CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                            >  1:86560/1‑101 (MQ=9)
                          CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                            <  1:242652/101‑1 (MQ=12)
                          CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                            <  1:406842/101‑1 (MQ=12)
                           CACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGA                                                                                           <  1:4620015/101‑1 (MQ=12)
                            ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                          <  1:5950808/101‑1 (MQ=12)
                            ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                          <  1:6095226/101‑1 (MQ=12)
                            ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                          >  2:2773203/1‑101 (MQ=9)
                            ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                          >  1:4072895/1‑101 (MQ=12)
                            ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                          <  1:1125803/101‑1 (MQ=12)
                             CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                         <  1:3795397/101‑1 (MQ=12)
                             CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                         >  2:5668881/1‑101 (MQ=12)
                             CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                         >  1:1331117/1‑101 (MQ=14)
                              GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                        >  2:3453673/1‑101 (MQ=12)
                              GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                        <  1:4307749/101‑1 (MQ=12)
                              GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                        >  2:5542217/1‑101 (MQ=12)
                              GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                        >  2:1495739/1‑101 (MQ=12)
                              GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                        >  2:4882420/1‑101 (MQ=14)
                              GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                        <  2:2240389/101‑1 (MQ=12)
                               GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                       >  2:4136769/1‑101 (MQ=12)
                                ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAT                                                                                      >  2:3244655/1‑101 (MQ=12)
                                 TCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATC                                                                                     <  2:4880912/101‑1 (MQ=12)
                                  CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                                                                                    >  1:1090076/1‑101 (MQ=9)
                                  CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                                                                                    >  1:1391421/1‑101 (MQ=9)
                                  CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                                                                                    >  2:328398/1‑101 (MQ=12)
                                   CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCC                                                                                   <  2:1117862/101‑1 (MQ=12)
                                   CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCC                                                                                   <  2:731374/101‑1 (MQ=12)
                                    cACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                                                                                  <  2:6715947/100‑1 (MQ=12)
                                    GACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCc                                                                                  >  2:3503013/1‑100 (MQ=9)
                                    GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGATCCGACCGATCCCA                                                                                  >  2:45704/1‑101 (MQ=12)
                                     ACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCAC                                                                                 <  1:1977637/101‑1 (MQ=12)
                                     ACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCAC                                                                                 <  2:5413595/101‑1 (MQ=12)
                                      CCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG                                                                                >  2:620145/1‑101 (MQ=9)
                                       gGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                                                                               >  1:4541797/2‑101 (MQ=14)
                                       CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                                                                               <  1:2419371/101‑1 (MQ=12)
                                       CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                                                                               <  1:5315881/101‑1 (MQ=12)
                                       CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                                                                               <  1:6101198/101‑1 (MQ=12)
                                        GATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                                                                              >  1:5787590/1‑101 (MQ=12)
                                        GATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                                                                              >  1:6647611/1‑101 (MQ=12)
                                              ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                        >  1:5666821/1‑101 (MQ=12)
                                              ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                        >  2:3881565/1‑101 (MQ=17)
                                               CGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACC                                                                       >  1:2096551/1‑101 (MQ=2)
                                               CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACC                                                                       >  2:350589/1‑101 (MQ=14)
                                                 GACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA                                                                     <  1:777995/101‑1 (MQ=12)
                                                  atCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT                                                                    <  2:6588178/99‑1 (MQ=12)
                                                  ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAGCCCACGGACCCGACAGAc                                                                    >  2:6333798/1‑100 (MQ=2)
                                                    CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC                                                                  >  2:1970811/1‑101 (MQ=1)
                                                     CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                                                                 >  1:569004/1‑101 (MQ=9)
                                                     CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCCCGGAACCGACCGATCac                                                                 >  2:4598592/1‑99 (MQ=12)
                                                      GACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                                                                <  1:2343025/101‑1 (MQ=12)
                                                      GACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                                                                <  1:3453797/101‑1 (MQ=12)
                                                       ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                                                               <  1:6760546/101‑1 (MQ=12)
                                                          GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCCCGGA                                                            >  1:6587622/1‑101 (MQ=2)
                                                             CCCCCGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                         <  1:1605925/101‑1 (MQ=12)
                                                             CCCACGGATCCCACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                         <  2:1848871/101‑1 (MQ=12)
                                                              CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCc                                                        >  1:5520048/1‑100 (MQ=0)
                                                               CACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                       <  1:6667948/101‑1 (MQ=0)
                                                               CACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                       <  1:1879357/101‑1 (MQ=0)
                                                                ACGGATCCGACCGGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                      <  2:2365630/101‑1 (MQ=12)
                                                                ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAGCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                      <  1:5855645/101‑1 (MQ=12)
                                                                  GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                    >  2:5138229/1‑99 (MQ=9)
                                                                  GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                    >  2:6554909/1‑101 (MQ=14)
                                                                  GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGATCCGACCG                                                    >  1:5649764/1‑101 (MQ=9)
                                                                   GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                   >  1:5416637/1‑101 (MQ=14)
                                                                    ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAc                                                  >  1:3183669/1‑100 (MQ=11)
                                                                     TCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAcc                                                 <  2:3703061/101‑3 (MQ=12)
                                                                                                                                                                                                                         
GACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC....................................................................................................  <  NC_014034/222072‑221956
....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCC  <  NC_014034/222045‑221946

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG