New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =458 (1.380)234 (0.700) 34/186 19.1 0.34 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222119 462 (1.290)coding (538/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

Only 100 of 247 total aligned reads displayed.

CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC........................................................  <  NC_014034/222047‑221956
...................................................................................................CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGA  <  NC_014034/222119‑222071
                                                                                            |||||||                                                 
CCCCCGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                 <  1:1605925/101‑1 (MQ=12)
CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                 >  1:6588518/1‑101 (MQ=9)
CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                 <  1:4709201/101‑1 (MQ=12)
CCCACGGATCCCACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                 <  2:1848871/101‑1 (MQ=12)
   ACGGATCCGACCGGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                              <  2:2365630/101‑1 (MQ=12)
   ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                              >  2:2773203/1‑101 (MQ=9)
   ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                              <  1:6095226/101‑1 (MQ=12)
   ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAGCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                              <  1:5855645/101‑1 (MQ=12)
    CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                             >  2:5668881/1‑101 (MQ=12)
     GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                            >  2:5542217/1‑101 (MQ=12)
     GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                            <  1:4307749/101‑1 (MQ=12)
     GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                            >  2:6554909/1‑101 (MQ=14)
     GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                            >  2:4882420/1‑101 (MQ=14)
     GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGATCCGACCG                                            >  1:5649764/1‑101 (MQ=9)
      GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                           >  1:5416637/1‑101 (MQ=14)
         CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                                        >  1:1090076/1‑101 (MQ=9)
           cACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                                      <  2:6715947/100‑1 (MQ=12)
              gGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                                   >  1:4541797/2‑101 (MQ=14)
               GATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                                  >  1:5787590/1‑101 (MQ=12)
                   CCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                              <  1:2889570/101‑1 (MQ=0)
                    tACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                             <  1:535465/100‑1 (MQ=0)
                     ACGGCCCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC                            <  2:5286626/101‑1 (MQ=0)
                     ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                            >  1:4319082/1‑101 (MQ=0)
                      CGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC                           <  1:744322/101‑1 (MQ=0)
                      CGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC                           <  1:2423084/101‑1 (MQ=0)
                      CGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC                           <  2:4863200/101‑1 (MQ=0)
                      CGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAGCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC                           <  1:3800817/101‑1 (MQ=0)
                      CGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACC                           >  1:4576705/1‑101 (MQ=9)
                      CGGAACCGACCGATCCCACGGCACCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg                           <  2:6993089/101‑2 (MQ=255)
                       GGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                          >  2:2651000/1‑101 (MQ=255)
                       GGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                          <  2:3923368/101‑1 (MQ=0)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCG                          >  1:6563606/1‑101 (MQ=2)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCG                          >  1:1324815/1‑101 (MQ=2)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCG                          >  1:1443078/1‑101 (MQ=2)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCG                          <  1:3776835/101‑1 (MQ=2)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGccgg                          >  1:7872/1‑97 (MQ=1)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                          >  2:1642292/1‑99 (MQ=1)
                        gatCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA                         <  1:2149192/98‑1 (MQ=255)
                        GACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA                         >  1:6325044/1‑101 (MQ=0)
                         ACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT                        <  1:1361103/101‑1 (MQ=0)
                         ACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT                        <  1:3702130/101‑1 (MQ=0)
                         ACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGAT                        <  1:330951/101‑1 (MQ=0)
                          CCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATC                       <  1:6225874/101‑1 (MQ=0)
                           CCGACCGATCCGACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                      <  2:308721/101‑1 (MQ=0)
                           CCGACCGATCCCCCGGATCCGACCGACCGCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                      <  1:2397530/101‑1 (MQ=255)
                            CGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCC                     <  1:260142/101‑1 (MQ=0)
                             cACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    <  2:2868059/100‑1 (MQ=0)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    <  1:891080/101‑1 (MQ=0)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    >  1:3596636/1‑101 (MQ=2)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    <  2:4153326/101‑1 (MQ=0)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    >  2:4667866/1‑101 (MQ=2)
                             GACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    >  1:4990778/1‑101 (MQ=0)
                             GACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                    <  1:4477920/101‑1 (MQ=0)
                              ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                   <  1:2572975/101‑1 (MQ=0)
                              ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                   <  2:5887637/101‑1 (MQ=0)
                              ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                   >  2:608864/1‑101 (MQ=0)
                              ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                   <  1:6760546/101‑1 (MQ=12)
                              ACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                   <  2:3259420/101‑1 (MQ=2)
                               CCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                  >  2:535453/1‑101 (MQ=0)
                                CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                 <  2:1324767/101‑1 (MQ=0)
                                CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                 >  2:1592058/1‑101 (MQ=0)
                                CGATCCCCCGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                 <  2:448555/101‑1 (MQ=255)
                                CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                 <  1:3118188/101‑1 (MQ=2)
                                CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                 >  1:3490770/1‑101 (MQ=0)
                                 GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGCTCCCACGGA                >  1:6724822/1‑101 (MQ=255)
                                 GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                >  2:242648/1‑101 (MQ=0)
                                  ATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAC               <  1:2703336/101‑1 (MQ=2)
                                  ATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAC               <  2:2170645/101‑1 (MQ=2)
                                  ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt               <  1:3870250/101‑2 (MQ=0)
                                  ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt               <  1:4032194/101‑2 (MQ=0)
                                  ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAC               >  1:4670306/1‑101 (MQ=0)
                                   gcctgCGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC              <  2:48110/96‑1 (MQ=9)
                                   TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC              <  2:461267/101‑1 (MQ=9)
                                   TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC              <  1:2913313/101‑1 (MQ=9)
                                   TCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc              <  1:650149/101‑3 (MQ=255)
                                   TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC              >  1:4933549/1‑101 (MQ=0)
                                    CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC             >  1:1129361/1‑101 (MQ=9)
                                    CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC             >  1:4186350/1‑101 (MQ=2)
                                    CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC             <  2:777088/101‑1 (MQ=0)
                                     ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG            <  2:3483087/99‑1 (MQ=17)
                                     CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG            <  2:4501603/101‑1 (MQ=0)
                                      tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGc           >  2:6841220/2‑100 (MQ=17)
                                      tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA           >  1:4251202/2‑101 (MQ=17)
                                      CACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA           <  1:1879357/101‑1 (MQ=0)
                                      CACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGA           >  1:1951244/1‑101 (MQ=0)
                                       ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC          <  1:3947994/101‑1 (MQ=0)
                                       ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGAACCGAC          >  2:4578287/1‑101 (MQ=12)
                                        CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACc         >  2:350589/1‑100 (MQ=14)
                                        CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACc         >  2:6265006/1‑100 (MQ=0)
                                         GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACcg        >  2:4727920/1‑99 (MQ=11)
                                         GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACcg        >  2:34411/1‑99 (MQ=0)
                                           ATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAC      <  2:4037517/101‑1 (MQ=255)
                                            cCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAACCGCCGGACC     >  2:1279188/2‑101 (MQ=12)
                                            TCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC     <  2:3703061/101‑1 (MQ=12)
                                             CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC    >  2:1125755/1‑101 (MQ=17)
                                              CGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc   <  1:5578839/101‑2 (MQ=255)
                                              CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc   <  1:6398936/101‑2 (MQ=14)
                                              CGACCGATCCCACGGATCCGACCGATCCCACCGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc   <  1:1153653/101‑2 (MQ=9)
                                               GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACacca  >  2:3865358/1‑97 (MQ=14)
                                               GACCGAGCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca  <  1:2072867/101‑3 (MQ=2)
                                                                                            |||||||                                                 
CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC........................................................  <  NC_014034/222047‑221956
...................................................................................................CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGA  <  NC_014034/222119‑222071

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG