New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =406 (1.400)38 (0.130) 38/162 15.1 0.09 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222125 320 (0.890)coding (532/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC..........................................................................  <  NC_014034/222049‑221956
.................................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGA  <  NC_014034/222125‑222071
                                                                                              |||||||||||||||||||                                                       
acCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAT                                                                     <  1:42954/99‑1 (MQ=9)
  CCCCCGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                   <  1:1605925/101‑1 (MQ=12)
  CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                   >  1:6588518/1‑101 (MQ=9)
  CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                   <  2:2405972/101‑1 (MQ=12)
  CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                   <  1:4709201/101‑1 (MQ=12)
  CCCACGGATCCCACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                   <  2:1848871/101‑1 (MQ=12)
   CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCg                                                                  >  1:86560/1‑100 (MQ=9)
   CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCg                                                                  <  1:242652/101‑2 (MQ=12)
   CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCg                                                                  <  1:406842/101‑2 (MQ=12)
    CACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCga                                                                 <  1:4620015/101‑3 (MQ=12)
            cggcgGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCG                                                         <  2:3569390/96‑1 (MQ=9)
              ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGATCCCACGGATCCCACCGATCCGAC                                                       >  2:4929829/1‑101 (MQ=0)
               CCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACG                                                      <  2:5228489/101‑1 (MQ=0)
                CGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                                                     <  1:4119702/101‑1 (MQ=2)
                 GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGcagga                                                    >  1:6932484/1‑96 (MQ=9)
                  ATCCCACGGACCCGACCGATGCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGAC                                                   <  1:4381833/101‑1 (MQ=0)
                   gccgcCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACC                                                  <  2:2997439/96‑1 (MQ=0)
                    CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                                                 <  1:786197/101‑1 (MQ=2)
                    CCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                                                 <  2:1343939/101‑1 (MQ=2)
                    CCCACGGACCCGACCCACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                                                 <  2:4182701/101‑1 (MQ=255)
                     CCACGGACCCGACCCATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCG                                                <  2:273984/101‑1 (MQ=0)
                         GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGCCGGACCCGACCG                                            >  2:45302/1‑101 (MQ=2)
                         GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGACCCGACGGACCCGACCG                                            >  1:5353767/1‑101 (MQ=2)
                             CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCccgcc                                        >  1:3093175/1‑96 (MQ=0)
                              cggCCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCC                                       <  1:5914560/98‑1 (MQ=0)
                              CGACCGACCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCC                                       <  1:6948334/101‑1 (MQ=0)
                               gcCCGCTCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCA                                      <  1:1626021/99‑1 (MQ=0)
                               GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCCACCGATCCCA                                      >  1:6262102/1‑101 (MQ=2)
                                gCCGACCCCACGCACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCAC                                     <  2:3054819/100‑1 (MQ=0)
                                ACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCAAC                                     >  1:257199/1‑101 (MQ=0)
                                 CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGCTCCCACG                                    >  2:986548/1‑101 (MQ=2)
                                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGACCCCACGGA                                  >  2:2468445/1‑101 (MQ=0)
                                      CCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCC                               >  1:3577103/1‑101 (MQ=2)
                                      CCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCC                               >  2:3939089/1‑101 (MQ=2)
                                       CCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCG                              <  2:3589105/101‑1 (MQ=0)
                                        CACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                             >  1:4904381/1‑101 (MQ=2)
                                         cCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                            <  1:6413569/100‑1 (MQ=0)
                                         cCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACTGACCCGAC                            <  2:5909768/100‑1 (MQ=0)
                                          cggccCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                           <  1:1590485/96‑1 (MQ=255)
                                          CGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                           >  1:2155384/1‑101 (MQ=2)
                                          CGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                           <  2:4321433/101‑1 (MQ=0)
                                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCa                          >  2:5647930/1‑100 (MQ=255)
                                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                          >  1:6266529/1‑101 (MQ=2)
                                            gacCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGA                         >  1:4722957/4‑101 (MQ=2)
                                             acCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAc                        >  1:6605557/3‑100 (MQ=2)
                                              cCCGACCGATCCGACGGACCCGACAGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATC                       >  2:5310887/2‑101 (MQ=255)
                                               CCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                      <  1:6543916/101‑1 (MQ=12)
                                               CCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                      <  1:2030415/101‑1 (MQ=12)
                                               CCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                      >  2:2877654/1‑101 (MQ=16)
                                                CGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCg                     <  1:1793955/101‑2 (MQ=12)
                                                 GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCga                    >  2:6068829/1‑99 (MQ=255)
                                                 GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCgc                    >  1:2128315/1‑99 (MQ=12)
                                                 GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCga                    >  1:2934544/1‑99 (MQ=255)
                                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCgca                   >  2:5855343/1‑98 (MQ=255)
                                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                   >  2:6561741/1‑101 (MQ=255)
                                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                   <  1:3974164/101‑1 (MQ=255)
                                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                   <  1:3530342/101‑1 (MQ=255)
                                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGAACGATCCCAC                   >  2:2703240/1‑101 (MQ=255)
                                                   CCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACG                  <  1:6384297/101‑1 (MQ=255)
                                                   CCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACG                  <  2:5943575/101‑1 (MQ=255)
                                                    CGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGG                 >  2:1201933/1‑101 (MQ=255)
                                                     GATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGA                >  1:2208653/1‑101 (MQ=255)
                                                     GATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGA                >  1:3552271/1‑101 (MQ=255)
                                                     GATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGA                >  2:2669392/1‑101 (MQ=255)
                                                      gTCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAC               <  1:45303/100‑1 (MQ=255)
                                                      ATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGcc               >  1:3884720/1‑99 (MQ=255)
                                                      ATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAC               >  2:5010077/1‑101 (MQ=255)
                                                      ATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAC               >  2:4010250/1‑101 (MQ=255)
                                                        ccgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC             <  1:1466640/98‑1 (MQ=255)
                                                        ccgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC             <  1:2680236/98‑1 (MQ=255)
                                                         cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG            <  1:4933803/99‑1 (MQ=9)
                                                         catCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG            <  2:7094162/98‑1 (MQ=255)
                                                          CACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA           <  2:6599791/101‑1 (MQ=255)
                                                           ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC          >  2:5945131/1‑101 (MQ=12)
                                                           ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC          >  1:3603587/1‑101 (MQ=12)
                                                            CGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACc         <  1:1163015/101‑2 (MQ=255)
                                                            CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACc         <  1:2934188/101‑2 (MQ=2)
                                                             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACcg        >  2:3226389/1‑99 (MQ=2)
                                                             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACcg        <  1:6661301/101‑3 (MQ=0)
                                                              GACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACcgc       >  2:2046597/1‑98 (MQ=2)
                                                              GACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA       >  2:6122379/1‑101 (MQ=0)
                                                              GACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA       >  1:4553209/1‑101 (MQ=0)
                                                                 CCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGagccc    >  1:2695615/1‑96 (MQ=0)
                                                                   GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCca  >  1:882897/1‑99 (MQ=0)
                                                                                              |||||||||||||||||||                                                       
ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC..........................................................................  <  NC_014034/222049‑221956
.................................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGA  <  NC_014034/222125‑222071

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG