New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	222079 =	614 (2.200)	55 (0.200)	5/156	32.6	0.11	coding (578/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222128	307 (0.860)					coding (529/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CCTGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC.....................................................................................  <  NC_014034/222177‑222079 .........................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066                                                                                                    ||||||||||||||||||||||                                                                CCTGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                                     >  1:317670/1‑101 (MQ=1)  CTGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                                                                    >  2:7106902/1‑101 (MQ=1)  CTGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                                                                    >  1:2077813/1‑101 (MQ=1)    GGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAcc                                                                                  >  2:3485537/1‑99 (MQ=1)                                         ccgacggcCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                                             <  2:3703141/93‑1 (MQ=2)                                            acggaCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCAC                                          >  1:1131509/6‑101 (MQ=0)                                                      CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                >  1:1331117/1‑101 (MQ=14)                                                       tGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                               <  1:2771844/100‑1 (MQ=0)                                                       GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                               >  2:6554909/1‑101 (MQ=14)                                                       GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                               >  2:4882420/1‑101 (MQ=14)                                                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGccgg                               >  1:7872/1‑97 (MQ=1)                                                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                               >  2:1642292/1‑99 (MQ=1)                                                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                               >  1:4881156/1‑99 (MQ=1)                                                        gatCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                              >  1:5416637/4‑101 (MQ=14)                                                        GACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA                              <  1:777995/101‑1 (MQ=12)                                                         atCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAT                             >  2:3244655/3‑101 (MQ=12)                                                         atCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAc                             >  1:3183669/3‑100 (MQ=11)                                                         ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAc                             >  2:4851013/1‑100 (MQ=11)                                                          tCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATC                            <  2:4880912/100‑1 (MQ=12)                                                           CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                           >  2:328398/1‑101 (MQ=12)                                                           CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                           >  1:1391421/1‑101 (MQ=9)                                                           CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                           >  1:1090076/1‑101 (MQ=9)                                                           CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                           >  1:4690939/1‑101 (MQ=1)                                                           CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                           >  2:5238559/1‑101 (MQ=1)                                                            CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                          >  1:569004/1‑101 (MQ=9)                                                            CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCC                          <  2:1117862/101‑1 (MQ=12)                                                            CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCC                          <  2:731374/101‑1 (MQ=12)                                                             cACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                         <  2:6715947/100‑1 (MQ=12)                                                             GACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                         <  1:2343025/101‑1 (MQ=12)                                                             GACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                         <  1:3453797/101‑1 (MQ=12)                                                             GACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCc                         >  2:3503013/1‑100 (MQ=9)                                                              ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                        <  1:6760546/101‑1 (MQ=12)                                                              ACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCAC                        <  1:1977637/101‑1 (MQ=12)                                                              ACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCAC                        <  2:5413595/101‑1 (MQ=12)                                                               CCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG                       >  2:620145/1‑101 (MQ=9)                                                                CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                      <  1:6101198/101‑1 (MQ=12)                                                                CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                      <  1:5315881/101‑1 (MQ=12)                                                                CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                      <  1:2419371/101‑1 (MQ=12)                                                                 GATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                     >  1:6647611/1‑101 (MQ=12)                                                                 GATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                     >  1:5787590/1‑101 (MQ=12)                                                                 GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAGGGATCCGACCGATacgcgcga                     >  2:4337168/1‑93 (MQ=0)                                                                  ATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAC                    >  2:689831/1‑101 (MQ=2)                                                                    CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                  >  1:1129361/1‑101 (MQ=9)                                                                    CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                  >  1:4186350/1‑101 (MQ=2)                                                                       ACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC               >  1:5666821/1‑101 (MQ=12)                                                                          GATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACGGA            >  1:4375488/1‑101 (MQ=0)                                                                            TCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC          <  2:3703061/101‑1 (MQ=12)                                                                             CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         <  1:3583360/101‑1 (MQ=17)                                                                             CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         >  2:1125755/1‑101 (MQ=17)                                                                             CCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         <  1:2635839/101‑1 (MQ=12)                                                                              CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc        <  1:6398936/101‑2 (MQ=14)                                                                              CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc        <  1:558883/101‑2 (MQ=14)                                                                              CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc        <  2:1879959/101‑2 (MQ=14)                                                                              CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc        <  1:6411304/101‑2 (MQ=14)                                                                               cACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca       <  2:3879699/100‑3 (MQ=0)                                                                               GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca       >  1:4819582/1‑99 (MQ=11)                                                                               GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACacca       >  2:3865358/1‑97 (MQ=14)                                                                                ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGCTCCGACGGACCCCAC      >  1:1775699/1‑101 (MQ=0)                                                                                  CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCGACGGACCCcaagg    >  2:1645648/1‑96 (MQ=0)                                                                                    ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACTGAc  >  2:4805932/1‑100 (MQ=0)                                                                                                    ||||||||||||||||||||||                                                                CCTGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC.....................................................................................  <  NC_014034/222177‑222079 .........................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG