New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	65 (0.190)	54 (0.150)	7/196	34.8	0.23	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2341510	298 (0.830)					intergenic (‑61/+9)	purQ/purS	phosphoribosylformylglycinamidine synthase subunit PurQ/phosphoribosylformylglycinamidine synthase subunit PurS
Rejected: Position hash score below cutoff.

TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG....................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTGC  <  NC_014034/2341510‑2341411                                                                                                                                                                                                              GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGGG                                                                                                     >  1:3213617/1‑101 (MQ=1)   GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGG                                                                                                     <  2:4574039/101‑1 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGGGACCCCGCCGGGG                                                                                                   >  2:3217442/1‑101 (MQ=0)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGG                                                                                                   <  2:2924482/101‑1 (MQ=1)      TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGTGGGG                                                                                                  >  2:1199614/1‑101 (MQ=0)      TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGG                                                                                                  >  2:6030360/1‑101 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGGGGGGg                                                                                                 >  1:4957542/1‑100 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGg                                                                                                 >  2:2859929/1‑100 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGC                                                                                                 <  2:6132951/101‑1 (MQ=1)        GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCc                                                                                                >  1:3210075/1‑100 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                               <  2:5630159/101‑3 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                               <  1:2416082/101‑3 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                               <  2:2916443/101‑3 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                              <  1:6796250/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                              <  2:2396785/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                              <  1:1471946/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                              <  1:126968/101‑4 (MQ=1)           CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtccg                                                                                             <  1:5671554/101‑5 (MQ=1)              CGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCC                                                                                          <  1:3598627/101‑1 (MQ=1)               GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                         <  2:5872949/101‑1 (MQ=1)               GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                         <  1:1686314/101‑1 (MQ=1)               GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                         <  2:1500400/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  2:391235/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  2:2686319/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  2:1767057/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  2:1072730/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  1:4110000/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  1:6658896/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  1:3524946/101‑1 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGCCCCGGGCGGGGGCTCCGCCCCCG                                                                                       <  1:4136488/101‑1 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                       <  1:2523779/101‑1 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                       <  2:1352952/101‑1 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                       >  2:6236971/1‑101 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                       <  1:7029774/101‑1 (MQ=1)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCCGGCCCCcc                                                                                      >  2:3282181/1‑99 (MQ=9)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCCGCCCCCcc                                                                                      >  1:2378621/1‑99 (MQ=0)                   AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGca                                                                                     <  2:4091960/101‑3 (MQ=1)                      GCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCC                                                                                  <  1:1697935/101‑1 (MQ=1)                       CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCC                                                                                 <  2:3005330/101‑1 (MQ=1)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCC                                                                                <  1:6506707/101‑1 (MQ=1)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCC                                                                                <  2:2619463/101‑1 (MQ=1)                         GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCG                                                                               <  2:2038077/101‑1 (MQ=1)                           AACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGC                                                                             <  2:6289981/101‑1 (MQ=1)                           AACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGC                                                                             >  2:1324777/1‑101 (MQ=1)                             CGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGT                                                                           <  2:55032/101‑1 (MQ=1)                             CGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGT                                                                           <  1:5391398/101‑1 (MQ=1)                               GCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                         <  2:2866500/101‑1 (MQ=1)                               GCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                         <  1:5318385/101‑1 (MQ=1)                               GCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                         <  1:662087/101‑1 (MQ=1)                               GCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                         <  1:1398857/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  1:412920/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  1:5138377/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  1:2241662/101‑1 (MQ=1)                                  CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG                                                                      <  1:6779663/101‑1 (MQ=11)                                                                                                                                                                                                            TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG....................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTGC  <  NC_014034/2341510‑2341411 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG