New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 510081	195 (0.570)	28 (0.080)	19/192	26.5	0.21	intergenic (+68/+119)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	= 974303	15 (0.040)					intergenic (+183/+76)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

GAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCGCCCCGGGCTTGCGCCCGGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCC....................................................................................................  >  NC_014034/509978‑510081 ....................................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGG  <  NC_014034/974303‑974205                                                                                                                                                                                                                        TGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCGCCCCGGGCTTGCGCCCGGGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCCGGcctc                                                                                               >  2:6378030/1‑97 (MQ=255)                                                                         cccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTT                                 <  2:6047052/98‑1 (MQ=0)                                                                          ccCCCGCCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTT                                <  1:2702716/99‑1 (MQ=0)                                                                           cCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTT                               <  1:5725318/100‑1 (MQ=0)                                                                              ccCCGGGGGCCCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTT                            <  1:417077/99‑1 (MQ=0)                                                                              CGCCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTT                            <  2:578430/101‑1 (MQ=0)                                                                                 CGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGT                         <  1:6193489/101‑1 (MQ=0)                                                                                  GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                        >  2:3247618/1‑101 (MQ=0)                                                                                  GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                        >  1:6199692/1‑101 (MQ=0)                                                                                   GGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGC                       <  1:3894695/101‑1 (MQ=0)                                                                                    GGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCA                      <  2:3698667/101‑1 (MQ=0)                                                                                     GGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAA                     <  1:4683064/101‑1 (MQ=0)                                                                                      GCTCCGCCCCCGGACCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAA                    <  2:79595/101‑1 (MQ=0)                                                                                       ccCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAAT                   <  1:1206241/99‑1 (MQ=0)                                                                                       CTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAAT                   <  1:6392472/101‑1 (MQ=0)                                                                                        cCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                  <  1:20595/100‑1 (MQ=0)                                                                                        cCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                  <  1:1961341/100‑1 (MQ=0)                                                                                        TCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                  <  2:1095969/101‑1 (MQ=0)                                                                                          CGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                <  2:3495353/101‑1 (MQ=0)                                                                                            CCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCT              >  2:6075685/1‑101 (MQ=0)                                                                                             CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG             >  1:3862487/1‑101 (MQ=0)                                                                                             CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG             >  2:4097199/1‑101 (MQ=0)                                                                                                CGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGG          >  1:758928/1‑101 (MQ=0)                                                                                                 ngcCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG         <  1:3910510/98‑1 (MQ=0)                                                                                                 GGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG         >  2:1084199/1‑101 (MQ=0)                                                                                                 GGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG         <  1:3648991/101‑1 (MQ=0)                                                                                                   cCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT       <  2:5998656/100‑1 (MQ=0)                                                                                                   cCCCCCGGGATATTTGTCGAAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT       <  2:1405557/100‑1 (MQ=0)                                                                                                   cCCCCCGGAATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT       <  2:2046590/100‑1 (MQ=0)                                                                                                                                                                                                              GAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCGCCCCGGGCTTGCGCCCGGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCC....................................................................................................  >  NC_014034/509978‑510081 ....................................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGG  <  NC_014034/974303‑974205 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG