New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744656 =	168 (0.480)	50 (0.140)	2/196	39.8	0.28	intergenic (+41/+171)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	900805 =	92 (0.260)					intergenic (‑134/‑153)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

GCCAAGGAAAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC....................................................................................................  <  NC_014034/744757‑744656 ....................................................................................................CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCAA  >  NC_014034/900805‑900904                                                                                                                                                                                                                                                                                     aggCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGG                             <  1:637300/98‑1 (MQ=14)                                                                          acgCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGG                             >  2:799049/4‑101 (MQ=14)                                                                          acgCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGG                             >  2:2027812/4‑101 (MQ=14)                                                                           cgCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGG                            <  2:3226603/99‑1 (MQ=14)                                                                            gCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGG                           >  1:1589895/2‑101 (MQ=14)                                                                            gCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGG                           >  2:5729659/2‑101 (MQ=14)                                                                             CCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGC                          >  1:1699966/1‑101 (MQ=14)                                                                              CCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCA                         >  2:1326640/1‑101 (MQ=32)                                                                               CGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA                        >  2:6863260/1‑101 (MQ=32)                                                                               CGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA                        >  1:2726006/1‑101 (MQ=32)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  2:979971/1‑101 (MQ=32)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  2:472288/1‑101 (MQ=32)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGACGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  1:6406251/1‑101 (MQ=17)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  1:638055/1‑101 (MQ=32)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  2:2136012/1‑101 (MQ=32)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  1:985712/1‑101 (MQ=32)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  2:1132463/1‑101 (MQ=32)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  2:116619/1‑101 (MQ=32)                                                                                  GGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT                     >  1:1430792/1‑101 (MQ=32)                                                                                  GGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT                     >  2:7096832/1‑101 (MQ=32)                                                                                  GGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT                     <  1:830346/101‑1 (MQ=32)                                                                                  GGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT                     >  1:3588879/1‑101 (MQ=32)                                                                                   GGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTG                    >  2:3714765/1‑101 (MQ=32)                                                                                   GGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTG                    >  1:3277277/1‑101 (MQ=32)                                                                                   GGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTG                    >  1:3446298/1‑101 (MQ=32)                                                                                    gtgCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGG                   >  2:6252600/4‑101 (MQ=32)                                                                                      gCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC                 >  2:1220318/2‑101 (MQ=31)                                                                                       gGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                <  1:859662/100‑1 (MQ=11)                                                                                       gGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                <  1:1302929/100‑1 (MQ=11)                                                                                       CGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                <  2:1995112/101‑1 (MQ=11)                                                                                       CGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                >  2:3029809/1‑101 (MQ=11)                                                                                       CGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGACACCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                >  2:477409/1‑101 (MQ=2)                                                                                        GGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCCAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA               >  2:3415189/1‑101 (MQ=1)                                                                                        GGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA               >  1:3831681/1‑101 (MQ=1)                                                                                        GGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA               >  2:3856555/1‑101 (MQ=1)                                                                                        GGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCCGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA               >  1:90097/1‑101 (MQ=1)                                                                                         GGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG              <  2:6910057/101‑1 (MQ=1)                                                                                         GGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG              >  2:54777/1‑101 (MQ=1)                                                                                           GGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG            >  2:3909579/1‑101 (MQ=1)                                                                                           GGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG            <  1:796653/101‑1 (MQ=1)                                                                                            ggcggcgCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCTGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG            <  2:5663471/94‑1 (MQ=0)                                                                                             CGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTC          >  2:6277035/1‑101 (MQ=1)                                                                                             CGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTC          >  2:3449218/1‑101 (MQ=1)                                                                                               ggagCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG         >  1:2244913/5‑101 (MQ=1)                                                                                               ggagCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG         >  1:2795172/5‑101 (MQ=1)                                                                                                gagCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGG        >  1:4455281/4‑101 (MQ=1)                                                                                                  gCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCG      >  1:674417/2‑101 (MQ=1)                                                                                                    CCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCC    <  2:4850733/101‑1 (MQ=1)                                                                                                    CCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCC    <  1:1479191/101‑1 (MQ=1)                                                                                                    CCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCC    >  2:4570078/1‑101 (MQ=1)                                                                                                                                                                                                            GCCAAGGAAAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC....................................................................................................  <  NC_014034/744757‑744656 ....................................................................................................CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCAA  >  NC_014034/900805‑900904 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG