New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744807	60 (0.200)	24 (0.080)	11/164	28.5	0.27	intergenic (+192/+20)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1699965 =	67 (0.190)					intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

CTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCG  >  NC_014034/744709‑744907                                                                                                   |                                                                                                     cTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCCGGc                                                                                                    >  1:2435395/1‑101 (MQ=255)   ttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGGccc                                                                                                  >  1:2721660/1‑100 (MQ=255)   ttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGGCt                                                                                                  >  1:6619286/1‑101 (MQ=255)         cTGCGGCGGTACAGCCTGTCACACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCCGGGCTGccccg                                                                                            >  2:6011818/1‑99 (MQ=18)            cggcggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGGCCCCCGCGGGGCGGCCCGGGCCTGCCCGCGGc                                                                                         >  2:2242070/1‑101 (MQ=18)               cggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGCGGccga                                                                                      >  1:6963914/1‑98 (MQ=255)                           tCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGGCTGCCCGAGGGGAAAACTCAcccccc                                                                          >  2:3086337/1‑99 (MQ=18)                                  ccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCCCCAGCCAg                                                                   >  1:1642215/1‑101 (MQ=255)                                            cTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGGCTGCCCGAGGCGGAATCTCACCCCCCGAGCCAGTCCCGAatca                                                         >  1:2520754/1‑101 (MQ=21)                                                       aCGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGc                                              >  2:5106661/1‑101 (MQ=255)                                                           cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCac                                          >  2:7010598/1‑100 (MQ=255)                                                             gggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCCTcc                                        >  1:1887835/1‑101 (MQ=255)                                                             gggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATcc                                        >  1:1848872/1‑101 (MQ=255)                                                             gggggTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATcc                                        >  2:4798823/1‑101 (MQ=255)                                                              ccgatcgggggggCGGACCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcg                                       <  2:1420381/94‑1 (MQ=37)                                                               gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCATCcgc                                      >  2:3139182/1‑101 (MQ=255)                                                               gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATcccc                                      >  2:325950/1‑99 (MQ=255)                                                                ggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCCTCcgcg                                     >  2:3044710/1‑101 (MQ=255)                                                                ggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAACCCATCcccg                                     >  2:1270732/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGCGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                    >  1:1199970/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCGGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                    >  2:3893129/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                    >  2:1812747/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                    >  2:942289/1‑101 (MQ=255)                                                                  tGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGc                                   >  1:5558538/1‑101 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcgagatcgg                                >  1:1420431/1‑94 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCacc                                >  1:3281179/1‑99 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                >  2:1059619/1‑101 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                >  1:5465689/1‑101 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGCCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                >  1:271647/1‑101 (MQ=255)                                                                       ggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAccc                              >  2:6815458/1‑100 (MQ=255)                                                                        gggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCCTCCGCGGCAAACTc                             >  1:1971545/1‑101 (MQ=255)                                                                        cccccccccccccgGGGGGTCCCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTc                             <  1:703172/93‑1 (MQ=255)                                                                         ggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCAGCAACCTCg                            >  2:1533493/1‑101 (MQ=255)                                                                         ggCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCCACCTCg                            >  1:2943207/1‑101 (MQ=255)                                                                            ggAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCCTgg                         >  2:170844/1‑101 (MQ=255)                                                                             gAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                        >  1:4587211/1‑101 (MQ=255)                                                                             gAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                        >  2:3680806/1‑101 (MQ=255)                                                                              aGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGAt                       >  1:3745952/1‑101 (MQ=255)                                                                               gCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATc                      >  1:557033/1‑101 (MQ=255)                                                                                ccccccGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGGTCa                     >  2:4231139/1‑101 (MQ=255)                                                                                ccccccGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCa                     >  2:6641535/1‑101 (MQ=255)                                                                                     cgcgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGc                >  2:4640310/1‑101 (MQ=255)                                                                                       cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc              >  2:3910133/1‑101 (MQ=255)                                                                                       cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc              <  1:5874549/101‑1 (MQ=255)                                                                                       cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc              >  1:2846612/1‑101 (MQ=255)                                                                                        gggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg             >  1:4490379/1‑101 (MQ=255)                                                                                        gggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATACGCGGCAACCTCGTGGATCAGATGCccg             >  2:5591126/1‑101 (MQ=255)                                                                                        gggCCGCCTGGGGCCGGCCCGAGGCGAAATCTCCCCCCTGGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg             <  2:1642154/101‑1 (MQ=255)                                                                                         ggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc            >  2:2998733/1‑101 (MQ=255)                                                                                          gTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc           >  2:1715399/1‑101 (MQ=255)                                                                                          gTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc           >  1:2508074/1‑101 (MQ=255)                                                                                            cGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGt         >  1:1738496/1‑101 (MQ=255)                                                                                             gCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc        >  1:7078034/1‑101 (MQ=255)                                                                                             gCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc        >  1:3747228/1‑101 (MQ=255)                                                                                              ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGGCCGCCGTCg       >  2:4127026/1‑101 (MQ=255)                                                                                              ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCg       >  1:5155670/1‑101 (MQ=255)                                                                                              ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGCGGATCAGATGCCCGCCGTCg       >  1:2023757/1‑101 (MQ=255)                                                                                               ctggggCCTGCCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGa      <  1:7010972/98‑1 (MQ=255)                                                                                                tCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGAt     >  2:3688369/1‑101 (MQ=255)                                                                                                 cGGGCCTGCCCGAGGCGAAATCTCACCCCTTGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATc    >  2:3100165/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGCTcc   >  2:5480808/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc   >  1:2897060/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc   >  1:937130/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc   >  1:1422539/1‑101 (MQ=255)                                                                                                   ggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccg  >  2:6930267/1‑101 (MQ=255)                                                                                                   ggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGACCACATGCCCGCCGTCGATccg  >  1:7106655/1‑101 (MQ=255)                                                                                                   |                                                                                                     CTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCG  >  NC_014034/744709‑744907 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG