New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744809	63 (0.200)	73 (0.230)	20/180	24.8	0.46	intergenic (+194/+18)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1732880 =	107 (0.300)					intergenic (‑304/‑99)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

CTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCGC  >  NC_014034/744709‑744908                                                                                                     |                                                                                                    cTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCCGGc                                                                                                     >  1:2435395/1‑101 (MQ=255)   ttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGGccc                                                                                                   >  1:2721660/1‑100 (MQ=255)   ttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGGCt                                                                                                   >  1:6619286/1‑101 (MQ=255)         cTGCGGCGGTACAGCCTGTCACACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCCGGGCTGccccg                                                                                             >  2:6011818/1‑99 (MQ=18)            cggcggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGGCCCCCGCGGGGCGGCCCGGGCCTGCCCGCGGc                                                                                          >  2:2242070/1‑101 (MQ=18)               cggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGCGGccga                                                                                       >  1:6963914/1‑98 (MQ=255)                           tCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGGCTGCCCGAGGGGAAAACTCAcccccc                                                                           >  2:3086337/1‑99 (MQ=18)                                  ccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCCCCAGCCAg                                                                    >  1:1642215/1‑101 (MQ=255)                                            cTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGGCTGCCCGAGGCGGAATCTCACCCCCCGAGCCAGTCCCGAatca                                                          >  1:2520754/1‑101 (MQ=21)                                                       aCGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGc                                               >  2:5106661/1‑101 (MQ=255)                                                           cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCac                                           >  2:7010598/1‑100 (MQ=255)                                                             gggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCCTcc                                         >  1:1887835/1‑101 (MQ=255)                                                             gggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATcc                                         >  1:1848872/1‑101 (MQ=255)                                                             gggggTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATcc                                         >  2:4798823/1‑101 (MQ=255)                                                              ccgatcgggggggCGGACCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcg                                        <  2:1420381/94‑1 (MQ=37)                                                               gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCATCcgc                                       >  2:3139182/1‑101 (MQ=255)                                                               gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATcccc                                       >  2:325950/1‑99 (MQ=255)                                                                ggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCCTCcgcg                                      >  2:3044710/1‑101 (MQ=255)                                                                ggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAACCCATCcccg                                      >  2:1270732/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGCGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                     >  1:1199970/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCGGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                     >  2:3893129/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                     >  2:1812747/1‑101 (MQ=255)                                                                 gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                     >  2:942289/1‑101 (MQ=255)                                                                  tGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGc                                    >  1:5558538/1‑101 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcgagatcgg                                 >  1:1420431/1‑94 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCacc                                 >  1:3281179/1‑99 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                 >  1:5465689/1‑101 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                 >  2:1059619/1‑101 (MQ=255)                                                                     ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGCCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                 >  1:271647/1‑101 (MQ=255)                                                                       ggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAccc                               >  2:6815458/1‑100 (MQ=255)                                                                        gggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCCTCCGCGGCAAACTc                              >  1:1971545/1‑101 (MQ=255)                                                                        cccccccccccccgGGGGGTCCCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTc                              <  1:703172/93‑1 (MQ=255)                                                                         ggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCAGCAACCTCg                             >  2:1533493/1‑101 (MQ=255)                                                                         ggCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCCACCTCg                             >  1:2943207/1‑101 (MQ=255)                                                                            ggAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCCTgg                          >  2:170844/1‑101 (MQ=255)                                                                             gAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                         >  2:3680806/1‑101 (MQ=255)                                                                             gAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                         >  1:4587211/1‑101 (MQ=255)                                                                              aGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGAt                        >  1:3745952/1‑101 (MQ=255)                                                                               gCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATc                       >  1:557033/1‑101 (MQ=255)                                                                                ccccccGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGGTCa                      >  2:4231139/1‑101 (MQ=255)                                                                                ccccccGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCa                      >  2:6641535/1‑101 (MQ=255)                                                                                     cgcgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGc                 >  2:4640310/1‑101 (MQ=255)                                                                                       cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc               >  2:3910133/1‑101 (MQ=255)                                                                                       cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc               >  1:2846612/1‑101 (MQ=255)                                                                                       cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc               <  1:5874549/101‑1 (MQ=255)                                                                                        gggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg              >  1:4490379/1‑101 (MQ=255)                                                                                        gggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATACGCGGCAACCTCGTGGATCAGATGCccg              >  2:5591126/1‑101 (MQ=255)                                                                                        gggCCGCCTGGGGCCGGCCCGAGGCGAAATCTCCCCCCTGGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg              <  2:1642154/101‑1 (MQ=255)                                                                                         ggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc             >  2:2998733/1‑101 (MQ=255)                                                                                          gTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc            >  2:1715399/1‑101 (MQ=255)                                                                                          gTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc            >  1:2508074/1‑101 (MQ=255)                                                                                            cGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGt          >  1:1738496/1‑101 (MQ=255)                                                                                             gCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc         >  1:7078034/1‑101 (MQ=255)                                                                                             gCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc         >  1:3747228/1‑101 (MQ=255)                                                                                              ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGGCCGCCGTCg        >  2:4127026/1‑101 (MQ=255)                                                                                              ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCg        >  1:5155670/1‑101 (MQ=255)                                                                                              ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGCGGATCAGATGCCCGCCGTCg        >  1:2023757/1‑101 (MQ=255)                                                                                               ctggggCCTGCCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGa       <  1:7010972/98‑1 (MQ=255)                                                                                                tCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGAt      >  2:3688369/1‑101 (MQ=255)                                                                                                 cGGGCCTGCCCGAGGCGAAATCTCACCCCTTGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATc     >  2:3100165/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGCTcc    >  2:5480808/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc    >  1:2897060/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc    >  1:1422539/1‑101 (MQ=255)                                                                                                  gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc    >  1:937130/1‑101 (MQ=255)                                                                                                   ggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccg   >  2:6930267/1‑101 (MQ=255)                                                                                                   ggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGACCACATGCCCGCCGTCGATccg   >  1:7106655/1‑101 (MQ=255)                                                                                                    gCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccgc  >  1:3250874/1‑101 (MQ=255)                                                                                                     |                                                                                                    CTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCGC  >  NC_014034/744709‑744908 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG