New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 218597826 (0.080)42 (0.120) 25/192 23.5 0.41 intergenic (+251/‑254) mtlK/RCAP_rcc02028 mannitol 2‑dehydrogenase/FeoA family protein
?NC_014034 2330300 = 93 (0.260)intergenic (+275/+37) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC..GCCGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCCAGGCAGGACGG  >  NC_014034/2185880‑2186077
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gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTTACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                                     <  2:3388154/101‑3 (MQ=37)
 cGGCTTGCCCCGACGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccg                                                                                                    <  2:6559502/101‑4 (MQ=25)
  ggCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccgg                                                                                                   >  2:5097781/1‑97 (MQ=25)
  ggCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccgg                                                                                                   >  2:1095687/1‑97 (MQ=25)
    cTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGGGGG..G..Ccc..gcggcg                                                                                               >  2:399100/1‑97 (MQ=25)
     ttGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgg                                                                                                >  2:1013453/1‑94 (MQ=25)
      tGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcggg                                                                                               >  2:5563753/1‑93 (MQ=21)
       tccccGACGGGCTTG.TTTTGATGGCAGAAGAAACGTCGAACCGCCCCC.TTTCACCTTGGCTCAAATAGCCCCGGCGGCCAGGGGCGGC..G..cccctggcggag                                                                                              >  2:4624593/2‑92 (MQ=255)
       gCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggg                                                                                              >  1:190550/1‑92 (MQ=21)
        ccccGAAGGCCTTG.TTTTGATGGCCCAAGAAACGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggtc                                                                                             <  2:7027853/101‑11 (MQ=18)
                                      aaaCGCCGAACCGCCCCC.TTTCCCCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcc                                                              <  2:4176276/101‑1 (MQ=2)
                                        ccGCCGACCCGCCCCC.TTTCCCCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGC..C..CCCCGGGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc                                                            <  1:6478459/100‑1 (MQ=2)
                                        aCGCCGACCCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCGGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc                                                            <  1:6207504/101‑1 (MQ=2)
                                         cGCCGAACCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCa                                                           <  2:5735672/101‑1 (MQ=0)
                                          gccgaccccccccc.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAg                                                          <  1:4208691/91‑1 (MQ=2)
                                           ccGACCCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGTTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAgc                                                         <  2:2203682/101‑1 (MQ=0)
                                           ccGACCCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAgc                                                         <  1:1013488/101‑1 (MQ=2)
                                                ccG.CCCCTTTTCGCCTTGGCTCAAATATCCCGGGGGTCGGGGGGGGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCac                                                    <  2:5196429/101‑1 (MQ=2)
                                                      cc.TTTCCCCTTGGCTCAAATAGCCCGGGGGCCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCaccgaccg                                              <  1:73419/101‑1 (MQ=9)
                                                      cc.TTTCCCCTTGGCTCAAATACCCCGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCaccgaccg                                              <  2:4847608/101‑1 (MQ=9)
                                                               cggggCTCAAATACCCGGGGGGCCGGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGa                                      <  1:5755541/98‑1 (MQ=2)
                                                                    cTCAAATATCCGGGGGGCCGGGGGGCGGG..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGcc                                 <  2:930069/101‑1 (MQ=9)
                                                                     ccAAATACCCGGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCt                                <  1:5313585/100‑1 (MQ=12)
                                                                       aaaTACCCGGGGGGTCGGGGGGCGGG..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGt                              <  2:3569245/101‑1 (MQ=9)
                                                                        atccgccggggggTCGGGGGGCGGACCC..CCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACCCCCCAGCGCCCCCGACCGACTTGCGACGGCCTGTc                             <  1:5413274/93‑1 (MQ=2)
                                                                        aaTATCCCGGGGGTCCGGGGGCGGA..GCCCCC..GGCGGGGTGCCTCC.GGCG.AAGCCCCAGGCGGAACAACCCACCGCCCCCGACCGCCCTGCGACgggccggc                             >  2:6222610/1‑95 (MQ=2)
                                                                              cggggggGCGGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCaa                       <  1:5564043/99‑1 (MQ=9)
                                                                                 ggggTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAg                    <  1:1095722/101‑1 (MQ=18)
                                                                                 ggggCCGGGGGGGGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAg                    <  2:4854786/101‑1 (MQ=12)
                                                                                    gTCCGGGGGCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGccc                 <  2:6535218/101‑1 (MQ=18)
                                                                                         ggggCGGA..GCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCca            <  1:6249211/101‑1 (MQ=18)
                                                                                             ggcggagccccc..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCcagg          <  2:4187299/92‑1 (MQ=18)
                                                                                                ggagccccc..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCcaggcag       <  2:6946075/95‑1 (MQ=21)
                                                                                                 ggcccccc..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCcaggcagg      <  1:1308938/96‑1 (MQ=21)
                                                                                                   cccccc..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCCAGGCAGGAc    <  1:6450873/98‑1 (MQ=25)
                                                                                                     cccc..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCCAGGCAGGACgg  <  1:2305232/100‑1 (MQ=25)
                                                                                                        |                                                                                                     
GCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC..GCCGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCCAGGCAGGACGG  >  NC_014034/2185880‑2186077

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG