New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2287727	5 (0.020)	31 (0.140)	7/126	26.9	0.20	intergenic (‑124/+111)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
	?	NC_014034	= 2490469	242 (0.680)					intergenic (‑82/+10)	soxD/soxB	sarcosine oxidase subunit delta/sarcosine oxidase subunit beta
Rejected: Position hash score below cutoff.

CGGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTAGTTGCGCCAGGAAAAAGCACA.GA.CTTTTGCCCGTTCACCCTGGCGCAAATCT  >  NC_014034/2287635‑2287783                                                                                              |                                                           cGGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGGTTCCACCCCCCCCCCCCCCCGGCggcggtg                                                    >  1:3739354/1‑95 (MQ=1)  ggCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTTTACACCCCCCCCCCCCCGCggggcggtgg                                                    >  2:1799821/1‑93 (MQ=1)   gCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGTTTCCACCCCCCCCCCCCCCCGGCgggggtgcg                                                  >  1:4476412/1‑93 (MQ=1)    cTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGTTTTCCCCCCCCCCCCCCCCCGGCGGCGGTgcgc                                                 >  2:6309566/1‑101 (MQ=1)    cTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGGTTACACCCCCCCCCCCCCCCGGCGGCGGTgcgc                                                 >  1:2544259/1‑101 (MQ=1)    cTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACACGCCCGTAGCGGC.GGGGGGTTCACACCCCCCCACCCCCCCGGCggcggtggtc                                                 >  2:494871/1‑92 (MQ=1)     ttGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTCTCGGCGGGGGGGTTCAAACCCCCGCCCCCCCAGGGCggggtactcc                                                 >  2:3025058/1‑92 (MQ=1)          cggcgcggTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTTACCACCCCCCCCCCCCCGGGGGGGAGtgggcccggga                                            >  1:919383/1‑91 (MQ=1)                    tGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGGTTTACCCCCCCCCCCCCCCCGCGCGCGGTTGGGCCCGCaaaaacaacaa                                  >  1:4878610/1‑95 (MQ=0)                           gtTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGTTCCCACCCCCCCCCCCCCCCGGCGCAGGTGGGCCCGGGAAAAAACCA.GA.Ccttttc                        >  1:1534924/1‑99 (MQ=0)                           gtTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGTTCACACCCCCCCCCCCCCCCGGCGGAGTTGCGCCCGGGAAAAACAAA.AA.Ccttttc                        >  1:2514423/1‑99 (MQ=0)                                     ccGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGGTTTACACCCCCCCCCCCCCCCGGCGGCGGTTGGCCCGGGAAAAGCACACAA.CTTTTTCCCTttaccc               >  1:5174032/1‑97 (MQ=0)                                            tctTGACCCGCCCGTAGCGGC.GGGGGGTTTACACCCCCCCCCCCCCCCGGGGGAGGTGCGCCCGGAAAAAGCACA.GA.CCTTTTTCCCCTCACCCCCgcgcc       >  1:3187842/1‑100 (MQ=0)                                            tctTGACCCGCCCGTAGCGGC.GGGGGGTTCACACCCCCCCACCCCCCGGGCGGAGGTGCGCCAGGGAAAAGCACA.GACCTTTTTCCCGTCCCCCCCgggca        >  2:1571921/1‑98 (MQ=0)                                                 aCCCGCCCGTAGCGGC.GGGGGGTTTACACCCCCCCCCCCCCCCGGCGGCGTTTCGCCCGGGAAAAACACC.GA.CTTTTTCCCCTTCACCCCCGCGCcaaaac  >  2:1613564/1‑98 (MQ=0)                                                 aCCCGCCCGTAGCGGC.GGGGGGTTTACACCCCCCCCCCCCCCCGGCGGAGCTGCGCCCGGAAAAAACCCA.AA.CCTTTTCCCCTTCCCCCCgggggcaaact  >  1:7107801/1‑92 (MQ=0)                                                                                              |                                                           CGGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTAGTTGCGCCAGGAAAAAGCACA.GA.CTTTTGCCCGTTCACCCTGGCGCAAATCT  >  NC_014034/2287635‑2287783 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG