New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1608051 =	0 (0.000)	120 (0.380)	31/176	19.3	0.42	intergenic (+321/‑26)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_014034	2808467 =	328 (0.920)					intergenic (+22/+132)	pyrD2/acsA2	dihydroorotate oxidase/acetate‑‑CoA ligase
Rejected: Position hash score below cutoff.

CCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCG  >  NC_014034/1607948‑1608151                                                                                                        |                                                                                                     ccTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCa                                                                                                      <  1:2429373/101‑1 (MQ=37)  cTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAc                                                                                                     <  1:7024886/101‑1 (MQ=37)  cTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAc                                                                                                     <  2:6018717/101‑1 (MQ=37)  cTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAc                                                                                                     <  1:2665064/101‑1 (MQ=37)   ttttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcc                                                                                                    >  2:2462946/1‑101 (MQ=38)   ttttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcc                                                                                                    <  2:3091696/101‑1 (MQ=37)   ttttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcc                                                                                                    <  1:66641/101‑1 (MQ=37)    tttCCCAGCGGATCCCGCGACGGGGTGCGACGTC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccc                                                                                                   <  1:5954345/101‑1 (MQ=37)    tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccc                                                                                                   <  1:6495165/101‑1 (MQ=38)     ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc                                                                                                  <  1:6171719/101‑1 (MQ=37)     ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc                                                                                                  <  2:4799971/101‑1 (MQ=38)     ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc                                                                                                  <  2:2004635/101‑1 (MQ=37)      tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 <  2:7051014/101‑1 (MQ=37)      tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 <  1:3138362/101‑1 (MQ=37)       cccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCg                                                                                                >  1:6565181/1‑101 (MQ=38)       cccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCg                                                                                                <  1:2674029/101‑1 (MQ=38)        ccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGc                                                                                               <  2:5937329/101‑1 (MQ=38)         cAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg                                                                                              <  1:5662582/101‑2 (MQ=38)          aGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgg                                                                                             >  2:4074717/1‑99 (MQ=37)           gCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggg                                                                                            <  2:4286029/101‑4 (MQ=37)             ggATCCGGCGGCGGGGTGCGCCGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          <  1:3320096/101‑6 (MQ=25)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          <  1:5294306/101‑6 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          >  2:2137831/1‑96 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          >  1:164712/1‑96 (MQ=37)              gATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         >  1:2254267/1‑95 (MQ=37)               gtCCCGCCCCGGGGTGCGGCTCC.CGCGTCGCTTCCCGAAAGGCGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCCCCCCCGcgggatat                                                                                        <  2:3279271/100‑8 (MQ=255)               aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggctat                                                                                        >  2:1135215/1‑94 (MQ=37)               aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat                                                                                        <  1:2832441/101‑8 (MQ=37)               aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat                                                                                        <  1:2267924/101‑8 (MQ=37)                 cccGCGCCGGGGTGCGGCGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatattt                                                                                      <  2:2456961/101‑10 (MQ=25)                                                                                              gtggtgagaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCt            <  2:1454491/91‑1 (MQ=255)                                                                                              ggggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCt            >  2:2074341/11‑101 (MQ=255)                                                                                              ggggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCt            >  2:6489024/11‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  2:1724693/10‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           <  1:5411627/92‑1 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           <  1:4957505/92‑1 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           <  2:3030056/92‑1 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGGCTg           >  2:5442123/10‑101 (MQ=255)                                                                                                ggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTgg          >  1:1972872/9‑101 (MQ=255)                                                                                                 gtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGc         >  1:5847446/8‑101 (MQ=255)                                                                                                 gtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGc         >  2:596365/8‑101 (MQ=255)                                                                                                 gtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGc         >  2:727342/8‑101 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  2:3931607/95‑1 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        >  2:5152507/7‑101 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  2:6049096/95‑1 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  2:6619416/95‑1 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  2:2866784/95‑1 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        >  2:1138473/7‑101 (MQ=255)                                                                                                   ttgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATCAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       <  1:3339984/96‑1 (MQ=255)                                                                                                   gtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       >  2:7010303/6‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTTGGCAc      >  1:2196791/5‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      >  2:2488260/5‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      >  1:2251391/5‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  1:6034466/97‑1 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  1:4127207/97‑1 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      >  1:4521074/5‑101 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     <  1:2772313/98‑1 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     <  1:3354852/98‑1 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     >  1:5667596/4‑101 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     >  2:4555624/4‑101 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     >  2:447549/4‑101 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcgg    >  1:1151261/3‑101 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGGCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGAGGTGCTGGGGCTCGGGGGCTCGGGTCTgggccagg    >  1:3335921/3‑95 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggc   >  2:502891/2‑101 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggc   <  2:1233540/100‑1 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggc   >  2:3147921/2‑101 (MQ=255)                                                                                                        aCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggcg  >  2:1201352/1‑101 (MQ=255)                                                                                                        |                                                                                                     CCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCG  >  NC_014034/1607948‑1608151 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG