BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1103358 =	176 (0.500)	77 (0.220)	21/196	25.8	0.39	intergenic (‑358/+60)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
*	?	NC_014034	1253897 =	67 (0.190)	77 (0.220)	21/196	25.8	0.39	intergenic (+55/+36)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

Only 100 of 101 total aligned reads displayed.


GCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGT  >  NC_014034/1253834‑1253997


gCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGa                                                                          >  1:4686008/1‑101 (MQ=12)


gCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGa                                                                          >  1:6633384/1‑101 (MQ=9)


 cGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa                                                                         >  2:4888439/1‑101 (MQ=12)


 cGAAAAACA.CGGATCCCGCCCCTCTCTCATCTTGCCCTAAATACCT.....GGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa                                                                         <  2:5420628/101‑1 (MQ=2)


  gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  1:5449076/1‑101 (MQ=12)


  gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  2:2153241/1‑101 (MQ=12)


  gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  2:2652471/1‑101 (MQ=12)


  gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  2:385965/1‑101 (MQ=12)


  gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGAGCGGCGCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  2:2380062/1‑101 (MQ=12)


   aaaTAAC.CCGCCCCCCCCCCCCTCTCATCTTCCCCTAACTACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       <  2:599203/101‑1 (MQ=2)


   aaaTAAACCCGCCCCCGCCCCGCTCTCATCTTGCCCTAAATCCCG.....GGGGGGTGGGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        <  2:6528371/101‑1 (MQ=2)


   aaaTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaact                                                                       >  2:1508987/1‑99 (MQ=9)


   aaaTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       >  1:5369622/1‑101 (MQ=9)


    aaTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATc                                                                      >  2:358374/1‑101 (MQ=9)


     aTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATcc                                                                     >  1:6269538/1‑101 (MQ=9)


      tAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    >  1:2339168/1‑101 (MQ=9)


      tAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    >  1:3013033/1‑101 (MQ=9)


       taacccaaccccgccccgcTCTCATCTTGCCCTAAATCCCTGGGGGGGGGGGGGGG.....GGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    <  2:3210659/92‑1 (MQ=2)


       aaacccacccccgccccgcTCTCATCTTGCCCTAAATCCCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    <  2:1711473/92‑1 (MQ=2)


       aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  1:1626629/1‑101 (MQ=9)


       aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  2:3574807/1‑101 (MQ=9)


       aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  2:3964083/1‑101 (MQ=9)


       aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  2:5772795/1‑101 (MQ=9)


        aa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct                                                                  >  1:727808/1‑101 (MQ=9)


        aa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct                                                                  >  1:6587515/1‑101 (MQ=9)


          cccgccccccccccgcTCTCATCTTCCCCTAAATCCCG.....CGGGGGTGCG.....GGGGCGGACCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc                                                                 <  2:4751351/95‑1 (MQ=2)


          cccGACCCCGCCCCGCTCTCATCTTGCCCTAAATCCCT.....GGGGGGGGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc                                                                 <  2:3034648/100‑1 (MQ=2)


          cccGACCCCCCCCCGCTCTCATCTTGCCCTAAATCCCT.....CGGGGGTGCG.....GGGGGGGACCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc                                                                 <  2:2836045/100‑1 (MQ=9)


           ccGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctcc                                                                >  1:2119061/1‑100 (MQ=9)


            cgcccccgccccgcTCTCATCTTGCCCTAAATCCCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCAc                                                               <  2:5620518/97‑1 (MQ=2)


             gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg                                                              >  2:6454790/1‑101 (MQ=9)


             gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg                                                              >  2:5101049/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  2:316377/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  1:1996565/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  2:1139332/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  1:1179820/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  1:4584641/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  1:3095966/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg                                                             >  1:4803610/1‑101 (MQ=9)


               tCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc                                                            >  1:1545029/1‑101 (MQ=9)


                   gcccctcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCCATGGGAAATGCTCTCACGGCTTcc                                                        >  2:3222714/1‑101 (MQ=2)


                   gccccgcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc                                                        >  2:5282158/1‑101 (MQ=9)


                   gccccgcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc                                                        >  1:1399708/1‑101 (MQ=9)


                   cccccgcTCTCATCTTGCCCTAAACCCCT.....CGGGGGTGGGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc                                                        <  2:5218709/100‑1 (MQ=9)


                    ccccgcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCa                                                       >  2:2669166/1‑101 (MQ=9)


                        gcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc                                                   >  1:3758991/1‑101 (MQ=9)


                        gcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc                                                   >  1:6839975/1‑101 (MQ=9)


                        gcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc                                                   >  2:2015444/1‑101 (MQ=9)


                        gcTCTCATCTTG.CCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa                                                  >  1:4312414/1‑101 (MQ=2)


                         ctctCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa                                                  >  1:7125039/1‑101 (MQ=9)


                         ctctCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa                                                  >  2:2603671/1‑101 (MQ=9)


                          tctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg                                                 >  2:6389894/1‑101 (MQ=9)


                          tctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg                                                 >  2:5053429/1‑101 (MQ=9)


                          tctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGGTCAg                                                 >  2:2293350/1‑101 (MQ=9)


                           ctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAgg                                                >  2:3575244/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCANGGCTTCCAGTTCAggga                                              >  2:3059400/1‑99 (MQ=9)


                             cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  1:2029490/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  1:4424794/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  2:3697327/1‑101 (MQ=9)


                              aTCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGTCTTCCAGTTCAAGaaa                                             >  2:459963/1‑101 (MQ=2)


                              aTCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGGCGGGGCCCCCGCCGGGCCGCCTCGGGGAAAGGCGAGGGGAAATCCTCCCACGGCTTTTAGTTCGGGaaa                                             >  2:3194037/1‑101 (MQ=2)


                               tCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAt                                            >  2:632473/1‑101 (MQ=9)


                                                                       gcggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGGGCGCTGCg              >  2:3079239/11‑101 (MQ=37)


                                                                        cggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGa             >  2:3157891/10‑101 (MQ=255)


                                                                        cggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGa             >  2:5735963/10‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACTGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:1220632/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:6435732/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:3607364/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  1:3252577/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:490925/9‑101 (MQ=255)


                                                                         gcccccccccccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAACTTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            <  1:3712396/91‑1 (MQ=38)


                                                                          gagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAtt           >  1:6469896/8‑101 (MQ=255)


                                                                          gagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGACCGGTGCGCTGCGAtt           >  2:1260788/8‑101 (MQ=255)


                                                                           cccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          <  1:1381672/95‑1 (MQ=255)


                                                                           agcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          >  2:1105198/7‑101 (MQ=255)


                                                                           agcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          >  1:5872321/7‑101 (MQ=255)


                                                                            cccgccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  1:1721029/96‑1 (MQ=255)


                                                                            cccccgcccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  2:4685769/94‑1 (MQ=255)


                                                                            cccccctccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  2:5649773/94‑1 (MQ=255)


                                                                            ccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  1:6426510/96‑1 (MQ=255)


                                                                            ccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  1:6455120/96‑1 (MQ=255)


                                                                            ccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCCGCGacggg         <  2:2578407/96‑5 (MQ=38)


                                                                            cccccccccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  1:1186445/94‑1 (MQ=255)


                                                                             cccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtct        <  2:4191632/97‑1 (MQ=255)


                                                                             cccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtct        <  1:2650585/97‑1 (MQ=255)


                                                                             cccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtct        >  2:2625924/5‑101 (MQ=255)


                                                                             ccccccccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCCAGATGATCCGCAGCCCGGTGCGCTGCGATTtct        <  1:3714720/95‑1 (MQ=255)


                                                                              ccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtctc       <  1:1655901/98‑1 (MQ=255)


                                                                              ccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtctc       >  1:4003273/4‑101 (MQ=255)


                                                                               ccggcCGGGGCGCCTCGGCGAAAGCCGAGGCGTAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      <  2:5248405/98‑1 (MQ=255)


                                                                               cccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      <  2:1700642/99‑1 (MQ=255)


                                                                               cccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      <  1:4320471/99‑1 (MQ=255)


                                                                               cccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      >  1:1459395/3‑101 (MQ=255)


                                                                                cggcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCg     <  2:2339073/99‑1 (MQ=255)


                                                                                ccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCg     <  2:1179772/100‑1 (MQ=255)


                                                                                  gcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCggg   >  1:6566441/1‑101 (MQ=255)


                                                                                  gcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCggg   >  1:2379369/1‑101 (MQ=255)


                                                                                  gcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCggg   >  2:5839860/1‑101 (MQ=255)


                                                                                   ccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGt  >  1:833602/1‑101 (MQ=255)


                                                                                   ccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGt  <  1:1929776/101‑1 (MQ=255)


GCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGT  >  NC_014034/1253834‑1253997

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG