New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744688	121 (0.390)	28 (0.090)	19/172	24.4	0.29	intergenic (+73/+139)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 974293	15 (0.040)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

CCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974196‑974380                                                                                                   |                                                                                            gcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACa                                                                                           <  1:5001614/98‑1 (MQ=255)   ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCCCCTTGCGGCaaa                                                                                         >  1:3233851/2‑101 (MQ=38)   ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTTTGACaaa                                                                                         >  1:3109486/2‑101 (MQ=38)   ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaaa                                                                                         <  1:3319775/100‑1 (MQ=255)   ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGGTTTTACCTTGCGACaaa                                                                                         >  1:3994729/2‑101 (MQ=38)      gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTTCGCCAAacat                                                                                      >  1:1176731/1‑101 (MQ=38)      gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAatat                                                                                      <  2:1996968/101‑1 (MQ=255)      gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAaaat                                                                                      >  2:2576168/1‑101 (MQ=255)       ccccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTCCCTTGAGACAAATATc                                                                                     >  2:1640679/1‑101 (MQ=38)        cccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAatatac                                                                                    >  1:5115881/1‑99 (MQ=255)         ccccGGCCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                                                                   <  1:1219392/101‑1 (MQ=255)         ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                                                                   <  1:2389467/101‑1 (MQ=255)          cccGGACCCCCCAGCGTATTTGCACCAAGAAACAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                                                                 <  1:4739259/101‑1 (MQ=255)          cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                                                                 <  1:547310/101‑1 (MQ=255)           tctgACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gg                                                                                <  1:2690867/98‑1 (MQ=255)           ccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccccg                                                                                 >  1:2497111/1‑99 (MQ=255)             ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cggg                                                                              >  1:2327845/1‑101 (MQ=255)              gACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAAAATACC.agggg                                                                             >  2:4284499/1‑100 (MQ=38)              gACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggga                                                                             >  2:2690771/1‑100 (MQ=255)               aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTTCGACAAATATCCC.gggggg                                                                            >  2:1405557/1‑99 (MQ=255)               aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATTCC.gggggg                                                                            >  2:2046590/1‑99 (MQ=255)               aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggg                                                                            >  2:5998656/1‑99 (MQ=255)                 cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGTGACAAATATACC.gggggacc                                                                          >  2:3033084/1‑97 (MQ=38)                 cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtcc                                                                          >  1:3648991/1‑97 (MQ=255)                 cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtcc                                                                          <  2:1084199/101‑5 (MQ=255)                 cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggggggcn                                                                          >  1:3910510/1‑97 (MQ=255)                  ccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccg                                                                         <  1:758928/101‑6 (MQ=255)                    ccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cgggggccggg                                                                       >  2:6348916/1‑94 (MQ=255)                     cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgggg                                                                      <  1:3862487/101‑9 (MQ=38)                     cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgggg                                                                      <  2:4097199/101‑9 (MQ=38)                      aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccggggg                                                                     <  2:6075685/101‑10 (MQ=38)                             ttGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAAATTCCC.GGGG...GTGCg.ggggcggggac                                                          >  2:5302021/1‑91 (MQ=255)                                                        gacccGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCg                                    <  1:5370325/98‑1 (MQ=9)                                                        gATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCg                                    <  2:3233735/101‑1 (MQ=14)                                                         gtCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGa                                   <  2:2186351/100‑1 (MQ=2)                                                               cATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGaa                             <  2:1176683/101‑1 (MQ=11)                                                                   gccgctGCGCAGCGGCTTTTTTTCCCCTTGCGAAAAATACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATAc                         <  2:1639133/96‑1 (MQ=0)                                                                       ctGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGCCCCCGCGGCAGCCGCGGCGGAAAAacccc                     >  1:7067401/2‑101 (MQ=0)                                                                          cgcAGCGGCTTGTTTTCCCCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCcggcc                  <  1:6548505/101‑1 (MQ=11)                                                                              gCGGCTTGTTTCCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCaa              <  2:2497017/101‑1 (MQ=11)                                                                                 gCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCCTCGGCGGCAGCCGCGGGGGAGGAACCCCGCCCCCACgc           >  2:3306430/1‑100 (MQ=2)                                                                                       tttCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCGCCGGCAGCCGCGGGGAAATAAACCCGCCGCGACCGCCgggt     >  1:7068680/1‑99 (MQ=2)                                                                                       tttCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCCCGGCGGCAGCCGGGGGGGAACAACCCCGCCGCCACCGcccggg     >  2:4290408/1‑97 (MQ=0)                                                                                       tttCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGGCTCGGCGCCAGCCCGGGCGGAAAAACCCGCCCGCCACCGcccggc     >  1:2563992/1‑97 (MQ=2)                                                                                         tCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCGGCGGCCGCCGCGGCGAAAAACCCCCCCCCCCACCGccccgccc   >  1:476826/1‑95 (MQ=2)                                                                                          cACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtctc  <  2:5115621/101‑1 (MQ=11)                                                                                                   |                                                                                            CCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974196‑974380 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG