| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,891 | Δ1 bp | 18.9% | intergenic (+703/‑228) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,891 | 0 | G→. | 18.9% | 0.0 ‑0.4 ‑0.0 | 535 | intergenic (+703/‑228) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (46/55): ref base (208/225): total (255/280) | ||||||||||
| Fisher's exact test strand distribution p-value = 6.60e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.83e-01 | ||||||||||
Only 100 of 578 total aligned reads displayed.
GAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTGGATC > NC_014034/1395791‑1395991
|
aaaCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.cgc < 2:4827365/101‑1 (MQ=255)
aaaCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.cgc > 2:6442721/1‑101 (MQ=255)
aaaCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...GC..GAg.cgc > 2:2816183/1‑101 (MQ=255)
aCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.cgcc.g > 2:7683025/1‑101 (MQ=255)
ccTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.cgcc.gc > 1:3859637/1‑101 (MQ=255)
gcggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.Ca < 1:7172859/101‑1 (MQ=255)
gcggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.Ca < 2:2686791/101‑1 (MQ=255)
cggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.g < 2:7477175/101‑1 (MQ=255)
gTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGc > 2:3854064/1‑101 (MQ=255)
tGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCt > 2:8386769/1‑101 (MQ=255)
gAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTc > 1:2930974/1‑101 (MQ=255)
gTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTccc > 1:4072680/1‑101 (MQ=255)
ttGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccc < 1:4196794/101‑1 (MQ=255)
gCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccccc < 2:4682585/101‑1 (MQ=255)
gCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccccc < 1:4861850/101‑1 (MQ=255)
gCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccccc < 2:3323429/101‑1 (MQ=255)
cAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCcgc > 2:1757179/1‑101 (MQ=255)
tGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggg > 2:7763331/1‑101 (MQ=255)
gctAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCgggg > 1:5474784/3‑101 (MQ=255)
gATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCCC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCgggg < 1:1221726/101‑1 (MQ=255)
aTAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggggg > 2:7974560/1‑101 (MQ=255)
tAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGc < 1:3725089/101‑1 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg > 1:1412273/1‑101 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GGCGCTCCCCCCGCGGGGGCg > 2:8822694/1‑101 (MQ=255)
gccaacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTgg < 2:5631704/91‑1 (MQ=9)
gCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGa < 2:6275556/101‑1 (MQ=255)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTGCCCCCGCGGGGGCGTGGAt > 2:1003221/9‑101 (MQ=9)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGAt > 1:6812541/9‑101 (MQ=9)
cGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATc < 2:2975287/101‑1 (MQ=255)
gTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:2075981/101‑1 (MQ=255)
gTGGACGTCGCCCCGCCCGCGGGGGCGTGGGTCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:626847/101‑1 (MQ=255)
cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGa > 2:2545548/6‑101 (MQ=0)
tcgACGTCACTCCCCCCGCGGGGGGGTGGATCGAGACTGCG.CCGC.CTATCCCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGa < 1:767997/99‑1 (MQ=37)
tGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGa < 2:2116060/101‑1 (MQ=255)
cgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:5932566/97‑1 (MQ=2)
cctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGa > 2:8511203/6‑101 (MQ=9)
cctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGa > 1:3601421/6‑101 (MQ=9)
ccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGAt < 1:6543644/97‑1 (MQ=2)
gcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:1003239/98‑1 (MQ=2)
ctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGaa > 1:6130010/5‑101 (MQ=9)
ggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:5409195/99‑1 (MQ=2)
gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 2:5277187/2‑101 (MQ=2)
gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa < 2:6147275/100‑1 (MQ=2)
atgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc > 1:5138792/3‑101 (MQ=9)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACg < 1:8265134/101‑1 (MQ=255)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACg < 1:6964750/101‑1 (MQ=255)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGa > 2:3092871/1‑101 (MQ=255)
tCGCTCGCCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 2:7177164/101‑1 (MQ=9)
tCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 1:8385311/101‑1 (MQ=9)
tCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 2:1896981/101‑1 (MQ=9)
cGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGCGGATCGAAACAATg > 1:5297549/1‑101 (MQ=9)
gCTCCCCGCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGc < 1:1648682/101‑1 (MQ=255)
gCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGc > 1:2618497/1‑101 (MQ=9)
gCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGc < 2:1290315/101‑1 (MQ=9)
ccccccccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCg < 1:8063356/99‑1 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGG...TCTTCTGTTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGGGTGGGTCGagcaccc > 1:8942870/1‑95 (MQ=0)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACAATGCg > 2:4035197/1‑101 (MQ=9)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATAGatcggaagag > 1:8556946/1‑92 (MQ=9)
ccccccGCGGGGGCGTGGATCGAAACTTCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGtt < 2:5102342/101‑1 (MQ=255)
caccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggc > 2:1498702/3‑99 (MQ=9)
caccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggc > 2:5869239/3‑99 (MQ=9)
caccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCCCCCCCCGCGGGGGCGAGGATCGAAACAATGCggc > 2:8590016/3‑99 (MQ=9)
cccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcg < 1:1940832/101‑4 (MQ=9)
accccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcg > 2:6489925/2‑98 (MQ=9)
ccccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCa < 2:3554331/101‑1 (MQ=255)
ccccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCa < 2:8999403/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcgg < 2:228851/101‑7 (MQ=2)
ccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATg < 2:4900972/101‑1 (MQ=255)
cgcgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATgg < 1:7560309/101‑1 (MQ=255)
gcgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGc > 1:8690462/1‑101 (MQ=255)
gggggCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcgggcct < 1:346216/101‑11 (MQ=2)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt > 1:5560317/1‑101 (MQ=255)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt < 1:2833501/101‑1 (MQ=255)
ggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGGAACGATGCGTTCATGGCCTa > 1:5632861/1‑101 (MQ=255)
ggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACg < 1:4307524/101‑1 (MQ=255)
gCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGt < 2:8167934/101‑1 (MQ=255)
gTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg > 1:7419266/1‑101 (MQ=255)
tGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCgg > 2:4382781/1‑101 (MQ=255)
ggATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCggg > 1:4645542/1‑101 (MQ=255)
gATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGc < 2:700419/101‑1 (MQ=255)
aTCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCa > 2:6635509/1‑101 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...GA..GGG.CGCC.GCG.CA.TTCGCTCCCCCCGCGGGGGCGTGGATGGAGACGATCCGCTCCTCCCCCACGGCGGGCAgg > 1:9099135/1‑100 (MQ=19)
gAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTg < 1:30869/101‑1 (MQ=255)
aaaCTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTgg > 1:4457574/1‑101 (MQ=255)
aCTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAATCGATGCGTTCATGGCCTACGTCGGGCAGTGGAc < 1:6442970/101‑1 (MQ=255)
cTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACt < 1:3134720/101‑1 (MQ=255)
cTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACt < 2:6091104/101‑1 (MQ=255)
cg.ccgc.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGt < 1:1812374/101‑1 (MQ=255)
gc.cTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCt > 1:495628/1‑101 (MQ=255)
c.cTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTc > 1:7877931/1‑101 (MQ=255)
tATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTccc < 2:5502237/101‑1 (MQ=255)
aTCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATTGCCTACGTCGGGCAGTGGACTGGGTGCTcccc > 2:6771666/1‑101 (MQ=255)
aTCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTcccc > 1:673558/1‑101 (MQ=255)
cATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCcgc > 2:121855/1‑101 (MQ=255)
aTCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCcgcg > 1:2292651/1‑101 (MQ=255)
aTCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCcgcg > 2:4184964/1‑101 (MQ=255)
aTCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCGaccccccgg > 2:2402901/1‑98 (MQ=255)
aTCCGG...TC..GAG.CCCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGGCGCTCCCCCcgcg > 1:6655809/1‑101 (MQ=255)
gg...TC..GGG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCggggg < 1:330118/101‑1 (MQ=255)
aG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATTGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTgg < 2:6387940/101‑1 (MQ=255)
|
GAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTGGATC > NC_014034/1395791‑1395991
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|