BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,396,945	Δ1 bp	13.7%	coding (827/1578 nt)	RCAP_rcc01307 →	hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,396,945	0	G→.	13.7%	300.7 ‑1.9 ‑0.3	692	coding (827/1578 nt)	RCAP_rcc01307	hypothetical protein
Reads supporting (aligned to +/- strand): new base (40/53): ref base (279/260): total (338/354)
Fisher's exact test strand distribution p-value = 1.44e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.79e-01

Only 100 of 724 total aligned reads displayed.


CCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCC  >  NC_014034/1396845‑1397045


   gcgGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.Cg                                                                                                            >  2:4849910/1‑101 (MQ=255)


    cgGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGc                                                                                                           >  2:5607886/1‑101 (MQ=255)


     gggggCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCa                                                                                                          >  2:5174862/1‑101 (MQ=255)


            tGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.Ct.t                                                                                                >  1:6736775/1‑101 (MQ=255)


            tGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.Ct.t                                                                                                >  1:1616203/1‑101 (MQ=255)


             ggATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GT.CGCA.TCGG.CT.Tc                                                                                               >  1:9078144/1‑101 (MQ=255)


             ggATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.Tc                                                                                               >  1:2439622/1‑101 (MQ=255)


             ggATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.Tc                                                                                               >  1:6385334/1‑101 (MQ=255)


               aTCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCg                                                                                             >  1:7570068/1‑101 (MQ=255)


                tCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..c                                                                                          <  1:4116838/101‑1 (MQ=255)


                  gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.Ct                                                                                       <  1:4994298/101‑1 (MQ=255)


                      ccGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..Cgg                                                                                 >  2:6937016/1‑100 (MQ=255)


                       cGGTCCAGAGTTAGAGCCCGCGGGACTCCACAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTg                                                                                <  2:5760042/101‑1 (MQ=37)


                        ggTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTg.g                                                                              >  1:5879990/1‑101 (MQ=255)


                        ggTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTg.g                                                                              >  2:6841430/1‑101 (MQ=255)


                        ggTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGGg.g                                                                              >  2:8228939/1‑101 (MQ=255)


                           cccgataTAGACGCCACGGCCCTGGTCAGACGTGGCGCCCCCGGGGGGGCCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.CCTG.CT.TCCG..C.CTG..CGTG.GTCg                                                                           <  2:7474779/95‑1 (MQ=255)


                              gagaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTc                                                                        >  1:5269817/1‑101 (MQ=255)


                               agaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTcc                                                                       <  2:5389410/101‑1 (MQ=255)


                                  tAGGCCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTccccc                                                                    <  1:4850070/101‑1 (MQ=255)


                                   aGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTcccccc                                                                   <  1:8264603/101‑1 (MQ=255)


                                    gACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCcg                                                                  <  1:7193527/101‑1 (MQ=255)


                                    gACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCcg                                                                  <  2:1459281/101‑1 (MQ=255)


                                          gcgGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCggggg                                                            >  2:6556613/1‑101 (MQ=255)


                                             gACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGt                                                         <  2:2138065/101‑1 (MQ=255)


                                              ccctcctCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTg                                                        <  2:7637679/100‑1 (MQ=255)


                                               ctcgcggttgcGTCGCTCCCCCCGCGGGGGCCTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTg                                                        <  1:6584840/91‑1 (MQ=0)


                                                ggtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTgg                                                       >  2:6640914/11‑101 (MQ=9)


                                                ctcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                      >  1:3341548/1‑101 (MQ=255)


                                                attggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                      <  2:3065471/91‑1 (MQ=0)


                                                 ttggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                     <  2:711445/92‑1 (MQ=2)


                                                 gtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                      <  1:5405872/92‑1 (MQ=9)


                                                 gtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                      >  1:7048394/10‑101 (MQ=9)


                                                  cctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                    <  1:6063172/101‑1 (MQ=255)


                                                  cctcAGACGTCGCCCCCCCCGCGGGGNNNNNGTTCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                    <  1:4385400/101‑1 (MQ=255)


                                                   ctcAGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                   <  2:7799474/101‑1 (MQ=255)


                                                   cggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                    <  2:1037128/95‑1 (MQ=2)


                                                    ggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                   <  2:3520153/96‑1 (MQ=2)


                                                    ggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                   >  1:8134869/6‑101 (MQ=2)


                                                    gccccggTCCCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                  <  2:8769681/95‑1 (MQ=2)


                                                    ccgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGac                                                     >  2:2442617/6‑100 (MQ=2)


                                                     gttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                  >  1:77640/5‑101 (MQ=2)


                                                     cAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                 >  2:8979334/1‑101 (MQ=255)


                                                       tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGcaa                                                >  1:2091687/3‑101 (MQ=2)


                                                       tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGGGGGTCGaaa                                                >  1:1492067/3‑101 (MQ=2)


                                                       gACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                               <  2:7325429/101‑1 (MQ=255)


                                                        gcGTCGCTCCCCCCGGGGGGGCGTGGATCGAAACATTGCTA.T.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                               <  2:1359520/100‑1 (MQ=2)


                                                        ccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                 <  2:7261113/100‑1 (MQ=2)


                                                         tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                              >  1:2773859/2‑100 (MQ=9)


                                                         tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                              >  1:8050018/2‑100 (MQ=9)


                                                         ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..CCCG.G.CGCC.GC.AGCG.AGTG.CG.TCTGGAA.CAG..GATG.G.CGCTCCCCCCGCGGGGGCGTGGATCGAAAcc                                              >  1:3386243/2‑100 (MQ=2)


                                                         ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                             >  1:173610/2‑99 (MQ=2)


                                                         ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                             >  2:8619251/2‑99 (MQ=2)


                                                         cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGGGGATCGAAAcc                                              >  1:2312214/1‑100 (MQ=2)


                                                         cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt                                             <  2:7569744/101‑1 (MQ=255)


                                                          gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActac                                            <  2:5950203/101‑4 (MQ=2)


                                                          gTCGCCCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                            <  1:7845048/101‑1 (MQ=255)


                                                           tCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                           >  1:5566310/1‑101 (MQ=255)


                                                           tCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                           <  2:2304327/101‑1 (MQ=255)


                                                           tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcg                                            >  1:8763255/1‑98 (MQ=9)


                                                            cGCTCCGCCCGCGGGGGCGGGGATCGAAACA..GCCT.G.CGCG.GC.CGAA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAg                                          <  2:3647033/101‑1 (MQ=255)


                                                            cGCTCCCCCCGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                             >  2:672415/1‑100 (MQ=2)


                                                            cGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcgg                                           >  1:4689965/1‑97 (MQ=9)


                                                             gCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                         <  2:3957806/101‑7 (MQ=2)


                                                              cTCCCCCCGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                           >  1:3131852/1‑101 (MQ=2)


                                                              cTCCCCCCGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                           <  1:8538802/101‑1 (MQ=2)


                                                              cTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgcca                                         <  1:1834552/101‑7 (MQ=2)


                                                               tCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTAT.GGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgccac                                        >  1:8429512/1‑94 (MQ=2)


                                                               cccccccGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtc                                       <  2:4282698/100‑1 (MQ=255)


                                                                ccccccGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaat                                         <  2:6103686/101‑3 (MQ=2)


                                                                ccccccGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGG.CC.TATG..CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacaccggg                                      >  2:8384948/1‑92 (MQ=2)


                                                                ccccccGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                       <  2:4510027/101‑9 (MQ=9)


                                                                ccccccGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                       <  1:2698517/101‑9 (MQ=9)


                                                                ccccccGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                       >  2:1985070/1‑93 (MQ=9)


                                                                ccccccGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                       >  2:9112219/1‑93 (MQ=9)


                                                                 cccccGCGGGGGCGTGGATCGAAACT..GCGT.G.CGCG.CCATGAATTCAT.CG.AGCG..C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatg                                        <  1:5695275/101‑4 (MQ=2)


                                                                 cccccGCGGGGGCGTGGATCGAAAC...GCTG.G.CGCGCGC.CGCG.CCGG.ATCTTTG..T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                      <  1:985429/101‑10 (MQ=9)


                                                                  ccccGCGGGGGCGTGGATCGAAACAT.GGCT.GTGGCG.GC.AGTG.TCAG.GT.T.TT..C.CAG..CGGC.GTCGCCCCCCCCGCGGGGGCGTGGATCGAAAcccgccacgtc                                     <  1:3793565/101‑11 (MQ=2)


                                                                   cccGCGGGGGCGTGGATCGAAACA...ACT.G.ACC...C.GGCA.ACGGCCTATGCG..C.CGGA.CGTG.GTCGCTCCCCCCGCGGGGGCGGGGATCGAAACAACaccggggcc                                   >  2:2979755/1‑93 (MQ=2)


                                                                       ggggcgggTGGATCAAAACA..GCCT.G.CCCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTgg                               <  1:4218287/94‑1 (MQ=37)


                                                                       cgGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGCTgg                               >  2:2633654/1‑101 (MQ=255)


                                                                        gggggCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGt                              <  1:1942063/101‑1 (MQ=255)


                                                                          gggCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCa                            <  1:1013270/101‑1 (MQ=255)


                                                                             cGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.GT.TCCG..C.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGcc                         >  1:6464517/1‑101 (MQ=255)


                                                                             cGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGcc                         >  2:3400048/1‑101 (MQ=255)


                                                                                ggATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGa                      >  2:1651458/1‑101 (MQ=255)


                                                                                 ggtCGAAACA..GCCT.G.CGCC.GC.CGCA.TCGG.CC.TCCG..C.CTG..CGTG.GTCGCGCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGAc                     <  2:4966164/99‑1 (MQ=255)


                                                                                      aaaCA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGt                >  2:1190333/1‑101 (MQ=255)


                                                                                      aaaCA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGt                >  2:8020223/1‑101 (MQ=255)


                                                                                      aaaCA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGt                >  1:3574573/1‑101 (MQ=255)


                                                                                         cA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCg             >  1:6233549/1‑101 (MQ=255)


                                                                                             gCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTc           <  2:6358142/101‑1 (MQ=255)


                                                                                                t.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCt        <  2:4067948/101‑1 (MQ=255)


                                                                                                  g.cgcG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTc       <  1:404617/101‑1 (MQ=255)


                                                                                                    cgcg.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTcc      >  1:8889910/1‑101 (MQ=255)


                                                                                                    cgcg.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTcc      >  2:332854/1‑101 (MQ=255)


                                                                                                      cg.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTcccc    >  1:1227867/1‑101 (MQ=255)


                                                                                                       g.gC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTccccc   <  1:6841702/101‑1 (MQ=255)


                                                                                                       g.gC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTccccc   <  2:5823041/101‑1 (MQ=255)


                                                                                                         gC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTcccccc  >  1:7392731/1‑101 (MQ=255)


CCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.G.CGCG.GC.CGCA.TCGG.CT.TCCG..C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCC  >  NC_014034/1396845‑1397045

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG