New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1253895 =	135 (0.300)	50 (0.110)	4/198	40.0	0.17	intergenic (+53/+38)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
	?	NC_014034	2185834 =	338 (0.740)					intergenic (+107/‑398)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
Rejected: Position hash score below cutoff.

CCGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.G.................  <  NC_014034/1253995‑1253895 ......................................................................................................GGGGCTCCGCCCCGCACC  >  NC_014034/2185834‑2185850                                                                                                                           CGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GG                  >  2:3856785/1‑101 (MQ=1)  CGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GG                  >  1:6296051/1‑101 (MQ=1)   GGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGG                 >  1:142184/1‑101 (MQ=1)   GGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGG                 <  2:5707086/101‑1 (MQ=1)   GGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.CGG                 >  1:7643114/1‑101 (MQ=1)   GGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.CGG                 >  1:5053519/1‑101 (MQ=1)    GAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGCGGCGACCC.GGC.GGGG                >  2:8341546/1‑101 (MQ=1)     AGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGg               >  2:6121955/1‑100 (MQ=1)      GAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGGC.GGGGg               >  1:1877496/1‑100 (MQ=11)      GAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.CGGGgg              >  2:280372/1‑99 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGcatg             <  2:4331217/101‑5 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggg             >  2:475652/1‑98 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggg             >  1:2702243/1‑98 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggc             >  2:6545792/1‑98 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgct             >  2:4816373/1‑98 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgct             <  2:7903739/101‑4 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgct             <  2:7017969/101‑4 (MQ=1)       AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgcc             >  2:4986313/1‑98 (MQ=1)        AATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.TGGGgcgc            >  2:1235628/1‑97 (MQ=1)        AATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgggg            >  2:6031137/1‑97 (MQ=1)        AATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggcc            >  1:8770299/1‑97 (MQ=1)         ATCGCAGTGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgctcc           <  1:7077297/101‑6 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggtcc           >  2:3454441/1‑96 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggggc           >  2:137421/1‑96 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgggcc           >  1:9083315/1‑96 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgctcc           <  1:2593928/101‑6 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgctcc           <  2:555277/101‑6 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgctcc           <  2:8340626/101‑6 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgctcc           <  1:6252050/101‑6 (MQ=1)         ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGgctcc           <  2:4784073/101‑6 (MQ=1)           CGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.CGGGgggcgcg         >  2:3327251/1‑94 (MQ=0)            GCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCC         <  2:1070970/101‑1 (MQ=1)            GCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCC         <  2:5675098/101‑1 (MQ=1)            GCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggtccgcc        >  2:8736253/1‑93 (MQ=1)             CAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCC        <  1:2103702/101‑1 (MQ=1)             CAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.GGGGggtcccccc       >  1:5956682/1‑92 (MQ=0)              AGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCC       <  2:5197046/101‑1 (MQ=1)              AGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCC       >  2:7626893/1‑101 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGTCCC.GGCGGGGGCTCCGCCCCc      <  1:9189978/101‑2 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCc      <  1:2750882/101‑2 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCc      <  2:3660782/101‑2 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCc      <  2:5925086/101‑2 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCc      <  1:8249661/101‑2 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCc      <  2:8165954/101‑2 (MQ=1)               GCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCc      <  1:6122192/101‑2 (MQ=1)                CGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCcg     <  1:3149522/101‑3 (MQ=1)                CGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCcg     <  2:2499002/101‑3 (MQ=1)                CGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCcg     <  1:8556298/101‑3 (MQ=1)                 GCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCcgc    <  1:6582211/101‑4 (MQ=11)                   ACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGCGGGGGCTCCGCCCCcgcac  <  1:3938966/101‑6 (MQ=32)                                                                                                                          CCGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCC.GGC.G.................  <  NC_014034/1253995‑1253895 ......................................................................................................GGGGCTCCGCCCCGCACC  >  NC_014034/2185834‑2185850 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG