| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 1303942 = | 205 (0.570) | 10 (0.030) | 6/156 | 33.9 | 0.03 | intergenic (+129/+28) | urtE/RCAP_rcc01231 | urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
| ? | NC_014034 | = 1478624 | 375 (0.820) | intergenic (+112/+31) | RCAP_rcc01372/RCAP_rcc01373 | ABC transporter ATP‑binding protein/RpiR family transcriptional regulator | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
CCCGA............................................................................................................. < NC_014034/1303946‑1303942
............................CTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG < NC_014034/1478624‑1478539
||||||||||||||||||||||
aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC > 2:631349/4‑101 (MQ=255)
aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC < 2:5326230/98‑1 (MQ=255)
agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT < 1:8903650/99‑1 (MQ=255)
agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT > 1:9194262/3‑101 (MQ=255)
agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT < 1:6851227/99‑1 (MQ=255)
agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT > 2:6921772/3‑101 (MQ=255)
agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT > 2:4373473/3‑101 (MQ=255)
agGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCT < 2:4155309/99‑1 (MQ=255)
gGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTC < 1:8601555/100‑1 (MQ=16)
gGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTC < 2:8007077/100‑1 (MQ=16)
gGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTC > 2:2559189/2‑101 (MQ=16)
gGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTC < 2:2597351/100‑1 (MQ=16)
gGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCAACTTGCTC > 2:6238192/2‑101 (MQ=255)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 1:8052587/101‑1 (MQ=16)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 2:2102000/101‑1 (MQ=16)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 2:2117957/101‑1 (MQ=16)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC > 2:3022353/1‑101 (MQ=19)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 2:4049389/101‑1 (MQ=16)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 1:2875411/101‑1 (MQ=16)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 2:9029749/101‑1 (MQ=16)
GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGAATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC < 2:2940115/101‑1 (MQ=255)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 2:3208613/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 2:1414572/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 2:7572136/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA > 2:8679052/1‑101 (MQ=16)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA > 2:8827598/1‑101 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 1:3688803/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 1:3475718/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 1:1455416/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 1:5516815/101‑1 (MQ=12)
AGGGGGCGCTGCCCCCCTCTCGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA < 1:7240818/101‑1 (MQ=255)
GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA < 2:5372698/101‑1 (MQ=12)
GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA > 2:3381725/1‑101 (MQ=16)
GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA < 2:3098542/101‑1 (MQ=12)
GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA < 1:824171/101‑1 (MQ=12)
GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCGCCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA < 2:219070/101‑1 (MQ=255)
GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA > 2:8506304/1‑101 (MQ=16)
GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA < 2:2514426/101‑1 (MQ=12)
GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA < 1:5819754/101‑1 (MQ=12)
GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA < 2:7412813/101‑1 (MQ=12)
GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA < 1:9051971/101‑1 (MQ=12)
GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT < 1:7874775/101‑1 (MQ=12)
GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT < 1:4235153/101‑1 (MQ=12)
GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT > 1:4425522/1‑101 (MQ=16)
GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT < 1:2690254/101‑1 (MQ=12)
GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT > 2:9004061/1‑101 (MQ=16)
GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT < 1:6580185/101‑1 (MQ=12)
GGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTGACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATA > 1:6459941/1‑101 (MQ=255)
GGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATA < 1:7436783/101‑1 (MQ=12)
GGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATA < 1:8771681/101‑1 (MQ=12)
GGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATA < 2:7276086/101‑1 (MQ=12)
GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT < 2:6109197/101‑1 (MQ=12)
GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT < 2:5356885/101‑1 (MQ=12)
GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT < 2:5247964/101‑1 (MQ=12)
GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT < 2:4839434/101‑1 (MQ=12)
GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT < 1:4353482/101‑1 (MQ=12)
GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATAAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT < 1:2845607/101‑1 (MQ=255)
CGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATC < 2:3788292/101‑1 (MQ=12)
CGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATC < 2:8684262/101‑1 (MQ=12)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC > 2:6889036/1‑101 (MQ=12)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC > 1:2856986/1‑101 (MQ=12)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC > 2:9106390/1‑101 (MQ=12)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC < 2:6131204/101‑1 (MQ=9)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC < 1:4142992/101‑1 (MQ=9)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC > 1:5710077/1‑101 (MQ=9)
GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC < 1:417429/101‑1 (MQ=9)
GCTGCCCCCCCCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC < 1:8099487/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 1:9004483/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 2:8938371/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 1:1949737/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 1:5785559/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 2:8249209/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 2:5910818/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC > 2:7261284/1‑101 (MQ=12)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 1:3647059/101‑1 (MQ=9)
CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC > 2:6535718/1‑101 (MQ=12)
CTGCCCCCCTCTTGGCCTCTCGACCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC < 2:6341209/101‑1 (MQ=9)
TGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG > 2:4601907/1‑101 (MQ=12)
TGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG < 1:6576103/101‑1 (MQ=9)
||||||||||||||||||||||
CCCGA............................................................................................................. < NC_014034/1303946‑1303942
............................CTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG < NC_014034/1478624‑1478539
Base quality scores:
ATCG
< 3 ≤
ATCG
< 24 ≤
ATCG
< 31 ≤
ATCG
< 35 ≤
ATCG
< 41 ≤
ATCG
|