BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396166 =	308 (0.970)	46 (0.150)	6/138	31.7	0.13	coding (48/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	= 1397666	325 (0.710)	46 (0.150)	6/138	31.7	0.13	coding (1548/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


TTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG...........................................................................  <  NC_014034/1396207‑1396166


.........................................................................TAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGATGGGCGG  <  NC_014034/1397666‑1397623


                                          |||||||||||||||||||||||||||||||


cttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                  >  2:2017199/10‑101 (MQ=255)


cTTCGCCCCGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:7919594/100‑1 (MQ=255)


cTTCGCCCCGTTTCGACCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:4932370/100‑1 (MQ=255)


 ttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGA                 >  2:8718247/9‑101 (MQ=12)


 TTCGCCCCGTTTCGACCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGA                 <  2:8705216/101‑1 (MQ=255)


  tcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAG                >  2:7909446/8‑101 (MQ=12)


   cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  1:6045845/7‑101 (MQ=12)


   cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  1:7045905/7‑101 (MQ=12)


   cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  2:6738245/7‑101 (MQ=12)


   cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  1:7292519/7‑101 (MQ=12)


    gacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG              >  1:2216633/6‑101 (MQ=17)


    gacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG              >  1:3645048/6‑101 (MQ=17)


    gacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG              >  2:1375641/6‑101 (MQ=17)


      cccGTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC            <  1:4459262/98‑1 (MQ=255)


       cgtTTTCGATCCACCCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACa           <  2:431677/98‑2 (MQ=12)


        cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat          >  1:7560928/2‑99 (MQ=17)


        cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat          >  1:7266088/2‑99 (MQ=17)


        cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat          >  2:4353875/2‑99 (MQ=17)


        cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat          >  1:4808818/2‑99 (MQ=17)


         GTTTCGATCCGCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc         <  2:7571001/101‑4 (MQ=12)


         GTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATACCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc         <  2:1714012/101‑4 (MQ=255)


         GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc         >  2:7167719/1‑98 (MQ=17)


         GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc         >  2:8162188/1‑98 (MQ=17)


         GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc         >  2:2333066/1‑98 (MQ=17)


         GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc         >  1:143247/1‑98 (MQ=17)


          TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcc        >  1:6520033/1‑97 (MQ=0)


          TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCAGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcc        <  1:1286920/101‑5 (MQ=12)


           TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGcgatcct       >  1:8926549/1‑94 (MQ=12)


           TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcct       >  2:3490009/1‑96 (MQ=17)


           TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcct       >  2:7142821/1‑96 (MQ=17)


            TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctg      >  2:8422676/1‑95 (MQ=12)


            TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctg      >  1:2678971/1‑95 (MQ=12)


            TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctg      >  2:6697061/1‑95 (MQ=12)


             CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgt     >  1:3617532/1‑94 (MQ=12)


              GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgtt    >  2:245186/1‑93 (MQ=12)


              GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgtt    >  2:1999902/1‑93 (MQ=12)


              GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgtt    >  2:225647/1‑93 (MQ=12)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  1:947483/1‑92 (MQ=255)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  2:6715964/1‑92 (MQ=255)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  2:7613591/1‑92 (MQ=255)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  1:6100040/1‑92 (MQ=255)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  2:4399461/1‑92 (MQ=255)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  2:8436537/1‑92 (MQ=255)


               ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc   >  2:4157702/1‑92 (MQ=255)


                TCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttcc  >  2:8689713/1‑91 (MQ=255)


                TCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttcc  >  2:3299314/1‑91 (MQ=255)


                                          |||||||||||||||||||||||||||||||


TTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG...........................................................................  <  NC_014034/1396207‑1396166


.........................................................................TAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGATGGGCGG  <  NC_014034/1397666‑1397623

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 27 ≤


ATCG

< 34 ≤


ATCG

< 39 ≤


ATCG