New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1473410 =	NA (NA)	11 (0.030)	6/154	33.7	1.00	intergenic (+117/+102)	nadE/RCAP_rcc01367	NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein
	?	NC_014034	2853102 =	NA (NA)					intergenic (+100/+128)	RCAP_rcc02661/RCAP_rcc02662	DeoR family transcriptional regulator/class II aldolase/adducin N‑terminal domain‑containing protein/short‑chain dehydrogenase/reductase family oxidoreductase
Rejected: Position hash score below cutoff.

AAGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCC....................................................................................................  <  NC_014034/1473533‑1473410 .....................................................................................................CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTGCCCTGACGGGCGGGGAAAGGCGA  >  NC_014034/2853102‑2853201                                                                                                                                                                                                                                                                                                                          agtgctgcgGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGT                                     <  2:7526411/92‑1 (MQ=255)                                                                                              ttcAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGA                                <  1:5068877/98‑1 (MQ=255)                                                                                              ttcAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGA                                <  2:4883845/98‑1 (MQ=255)                                                                                              tgcAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGA                                <  1:6728962/98‑1 (MQ=255)                                                                                                ggGGCTCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAAC                              <  2:4756578/99‑1 (MQ=255)                                                                                                cAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAAC                              <  1:1781005/100‑1 (MQ=255)                                                                                                 AGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACC                             <  2:5732028/101‑1 (MQ=255)                                                                                                   GCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGT                           <  1:5326945/101‑1 (MQ=255)                                                                                                    CCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTT                          <  1:5000390/101‑1 (MQ=255)                                                                                                    CCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTCGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTT                          <  1:4763092/101‑1 (MQ=255)                                                                                                     CCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTG                         <  1:788758/101‑1 (MQ=255)                                                                                                                                                                                                                                  AAGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCC....................................................................................................  <  NC_014034/1473533‑1473410 .....................................................................................................CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTGCCCTGACGGGCGGGGAAAGGCGA  >  NC_014034/2853102‑2853201 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG