New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1473410 =	310 (0.880)	36 (0.100)	10/154	30.4	0.10	intergenic (+117/+102)	nadE/RCAP_rcc01367	NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein
	?	NC_014034	3622733 =	306 (0.670)					intergenic (+99/+132)	RCAP_rcc03420/rnhA2	LrgB family protein/ribonuclease H
Rejected: Position hash score below cutoff.

GCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCC....................................................................................................  <  NC_014034/1473530‑1473410 ....................................................................................................CGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACGGGGTCGCAACGGGCGGGGAAAAGC  >  NC_014034/3622733‑3622832                                                                                                                                                                                                                                                                                                                   GGGGCCCCAAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGGGGTC                                      <  2:7667116/101‑1 (MQ=255)                                                                                      ggcCCCCAAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCC                                     <  1:5065593/98‑1 (MQ=255)                                                                                      GGGCCCCAAGGCCCTCGGCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCC                                     <  2:604528/101‑1 (MQ=255)                                                                                       gcCCCAAAGGCCCGCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCT                                    <  1:5369928/99‑1 (MQ=255)                                                                                        GCCCCAAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTG                                   <  1:4992640/101‑1 (MQ=255)                                                                                          cccaggcCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCC                                 <  2:3446221/94‑1 (MQ=255)                                                                                          cccAAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCC                                 <  1:1727772/98‑1 (MQ=255)                                                                                           ccagGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCG                                <  1:3017943/97‑1 (MQ=255)                                                                                           ccAAGGCCCTCGGCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCG                                <  2:2981434/99‑1 (MQ=255)                                                                                            cAAGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGC                               <  1:7584250/100‑1 (MQ=255)                                                                                             agGGCCCTCGGCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCA                              <  2:5806125/99‑1 (MQ=255)                                                                                              gGGCCCTCGGCCGGCCCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAG                             <  2:7918735/100‑1 (MQ=255)                                                                                              agcCCCTCGCCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAG                             <  2:3420582/98‑1 (MQ=255)                                                                                              AGGCCCCCGGCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAG                             <  1:3204552/101‑1 (MQ=255)                                                                                               GGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGA                            <  1:7094302/101‑1 (MQ=255)                                                                                                GCCCTCGGCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGAC                           <  1:5894217/101‑1 (MQ=255)                                                                                                GCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGAC                           <  1:4183317/101‑1 (MQ=255)                                                                                                GCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGAC                           <  1:1420405/101‑1 (MQ=255)                                                                                                GCCCGCGCCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGAC                           <  2:3441719/101‑1 (MQ=255)                                                                                                GCCCCCGGCCGGCCCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGAC                           <  1:6942669/101‑1 (MQ=255)                                                                                                 CCCTCGGCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACG                          <  1:4477811/101‑1 (MQ=255)                                                                                                 CCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACG                          <  2:3727435/101‑1 (MQ=255)                                                                                                 CCCGCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACG                          <  1:7118691/101‑1 (MQ=255)                                                                                                  CCTCGCCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACGG                         <  1:3526205/101‑1 (MQ=255)                                                                                                   CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACGGG                        >  1:947188/1‑101 (MQ=255)                                                                                                    TCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACGGGG                       >  1:7568412/1‑101 (MQ=255)                                                                                                                                                                                                                               GCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCC....................................................................................................  <  NC_014034/1473530‑1473410 ....................................................................................................CGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTTCGCGCCGCCGGGGCGGGACGCTGGCCTCTGCCGTGCTTGGGGATGCGGTCCTGCCGCAGACGGGGTCGCAACGGGCGGGGAAAAGC  >  NC_014034/3622733‑3622832 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG