New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1473433 =	408 (0.890)	11 (0.020)	4/198	40.0	0.03	intergenic (+140/+79)	nadE/RCAP_rcc01367	NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein
	?	NC_014034	3281628 =	374 (0.820)					intergenic (+81/+161)	RCAP_rcc03088/RCAP_rcc03089	flavin reductase domain‑containing protein/group 1 glycosyl transferase
Rejected: Position hash score below cutoff.

AAGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCC....................................................................................................  <  NC_014034/1473533‑1473433 .....................................................................................................CCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCCG  >  NC_014034/3281628‑3281727                                                                                                                                                                                                           AAGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCC.GGGGCCCACAGGGCC                                                                                                     >  2:513301/1‑101 (MQ=0)  AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCACGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCC                                                                                                     >  1:6485275/1‑101 (MQ=1)                                                                                          gcgCCAAAGGTCCCCGGCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTT             <  2:89695/98‑1 (MQ=255)                                                                                               aaggcgCCCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCC        <  1:910949/95‑1 (MQ=255)                                                                                               aaggcgCCCCGGCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCC        <  1:3928003/95‑1 (MQ=255)                                                                                               aaggcgCCCCGGCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCC        <  2:4972639/95‑1 (MQ=255)                                                                                                aggcgCCCCGGCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCG       <  2:3070505/96‑1 (MQ=255)                                                                                                   cgCCCCGGCCGGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCC    <  2:1033990/99‑1 (MQ=255)                                                                                                   cgCCCCGCCCGGCGCCGGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCC    <  2:5036691/99‑1 (MQ=255)                                                                                                   cgCCCCGCCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCC    <  2:3399067/99‑1 (MQ=255)                                                                                                    gCCCCGGCCGGCGCCCGCCCCGCCCATGGGGGTCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCC   <  1:4567227/100‑1 (MQ=255)                                                                                                    gCCCCGGCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCC   <  2:1717454/100‑1 (MQ=255)                                                                                                     CCCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCCG  <  2:8443542/101‑1 (MQ=255)                                                                                                                                                                                                           AAGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCC....................................................................................................  <  NC_014034/1473533‑1473433 .....................................................................................................CCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCCG  >  NC_014034/3281628‑3281727 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG