New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1613898 =	346 (0.770)	10 (0.020)	7/196	37.0	0.03	intergenic (+61/+166)	rnd2/uvrD	ribonuclease D/DNA helicase II
	?	NC_014034	3000500 =	408 (0.890)					intergenic (+236/+60)	RCAP_rcc02808/RCAP_rcc02809	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

AAGACCGTTTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCTTTGGGCCC...................................................................................................  <  NC_014034/1613999‑1613898 ....................................................................................................CCCCGGCGGTCACGGGACATCTGTTTCGCATGGCCTCGGCGATGGCCGAGGCCAGATCAGCGTCACTTCAGCGCCACATCCTGCGCCAGCCCGCCATCGGG  >  NC_014034/3000500‑3000598                                                                                                                                                                                                             GACCGTTTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGGCGAGGGGCTTTGGGCCCC                                                                                                    >  1:1146829/1‑101 (MQ=255)      CGTTTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCTTTGGGGCCCCcg                                                                                                 >  1:8099817/1‑99 (MQ=255)       GTTTCCCCAAGCGCAACAAAGTCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCTTTGGGCCCCCGGC                                                                                                >  1:3046561/1‑101 (MQ=255)        TTTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCCTTGGGCCCCCGGCG                                                                                               >  1:5432434/1‑101 (MQ=255)        TTTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCCTTCGGCCCCCCGCG                                                                                               >  1:5643820/1‑101 (MQ=255)         TTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGGCGAGGGCCTTTGGGGCCCCGGCGG                                                                                              >  2:8178634/1‑101 (MQ=255)           CCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGGGCAGGCCGAGGGCCCTTGGGCCCCCGGCGGgc                                                                                            >  1:5111321/1‑99 (MQ=255)           CCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGGCGAGGGGCTTTGGGCCCCCGGCGGgg                                                                                            >  1:775325/1‑99 (MQ=255)           CCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGGCGAGGGCCCTTGGGCCCCCGGCGGgg                                                                                            >  1:2427975/1‑99 (MQ=255)             CCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCTTTGGGCCCCCGGCGGggcg                                                                                          >  1:3506700/1‑97 (MQ=255)                                                                                                                                                                                                           AAGACCGTTTCCCCAAGCGCAACAAAGGCCTGCGTCCCGCCCCGGCGGCGCGAATGCGCCCGCCGATGGCGGGGCGGGCGCAGGCCGAGGGCCTTTGGGCCC...................................................................................................  <  NC_014034/1613999‑1613898 ....................................................................................................CCCCGGCGGTCACGGGACATCTGTTTCGCATGGCCTCGGCGATGGCCGAGGCCAGATCAGCGTCACTTCAGCGCCACATCCTGCGCCAGCCCGCCATCGGG  >  NC_014034/3000500‑3000598 Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG