New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1699960	91 (0.220)	36 (0.090)	21/184	27.0	0.31	intergenic (+33/+10)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2185978	70 (0.150)					intergenic (+251/‑254)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
Rejected: Position hash score below cutoff.

TCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGA.............................................................................................................  >  NC_014034/1699861‑1699960 ............................................................................................................GGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAA.GGGGCGGTTCGGCGTTTCTTGTGCCATCAAAAACAAGGCCTTCGGGGCAAGCCGCT  <  NC_014034/2185978‑2185879                                                                                                     ||||||||                                                                                                      TCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAC                                                                                                              <  1:6306643/101‑1 (MQ=1) TCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAC                                                                                                              <  2:762969/101‑1 (MQ=1) TCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAC                                                                                                              <  1:5821519/101‑1 (MQ=1)   gcgGGAGGGGGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCC                                                                                                            <  1:5575189/98‑1 (MQ=0)   gcgGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCC                                                                                                            <  2:3280004/98‑1 (MQ=1)   GCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCC                                                                                                            <  2:8675211/101‑1 (MQ=1)    CTGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCG                                                                                                           <  1:287534/101‑1 (MQ=1)    CTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCG                                                                                                           >  2:5548035/1‑101 (MQ=1)     ggggGGGGGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGC                                                                                                          <  1:5049692/97‑1 (MQ=0)     TGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGC                                                                                                          >  2:2709237/1‑101 (MQ=1)     TGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGC                                                                                                          >  1:1470284/1‑101 (MQ=1)      GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                                                                                                         >  2:261125/1‑101 (MQ=1)      GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                                                                                                         >  2:5295153/1‑101 (MQ=1)      GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                                                                                                         >  2:2042141/1‑101 (MQ=1)      GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                                                                                                         >  2:1638189/1‑101 (MQ=1)      GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                                                                                                         >  2:1049023/1‑101 (MQ=1)       GAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCc                                                                                                        >  1:4403182/1‑100 (MQ=1)        AGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcg                                                                                                       >  1:394021/1‑99 (MQ=1)        AGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcg                                                                                                       >  2:1557554/1‑99 (MQ=1)         GGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGG                                                                                                      >  2:2573763/1‑101 (MQ=1)         GGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGG                                                                                                      >  1:275126/1‑101 (MQ=1)         GGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGG                                                                                                      >  1:6369927/1‑101 (MQ=1)          GGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGG                                                                                                     >  2:3768735/1‑101 (MQ=1)          GGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGG                                                                                                     >  2:2424353/1‑101 (MQ=1)            AGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGC                                                                                                   >  1:5252653/1‑101 (MQ=1)              CCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCgc                                                                                                 >  1:1211742/1‑99 (MQ=1)              CCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTC                                                                                                 <  1:5112229/101‑1 (MQ=1)                GCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGgcccc                                                                                               >  1:4955262/1‑96 (MQ=0)                 CCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGC                                                                                              >  2:4871144/1‑101 (MQ=1)                  CGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGggcgccc                                                                                             >  1:7182935/1‑94 (MQ=0)                  CGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGggccccc                                                                                             >  1:7938717/1‑94 (MQ=0)                  CGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGCGCCGCC                                                                                             >  2:8329058/1‑101 (MQ=0)                   GATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCGCCGCCC                                                                                            >  1:2978695/1‑101 (MQ=1)                   GATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGCgaccgcc                                                                                            >  2:2431022/1‑94 (MQ=0)                   GATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGCTCCGCCC                                                                                            >  2:6899510/1‑101 (MQ=1)                      CTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGGTCCGCCCCCc                                                                                         >  2:3967193/1‑100 (MQ=1)                        CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGGGCCGCCCCCcgc                                                                                       >  1:1383258/1‑98 (MQ=0)                        CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCcgc                                                                                       >  2:8716255/1‑98 (MQ=1)                        CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGag                                                                                       >  2:2060394/1‑99 (MQ=1)                        CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCGCCGCCCCCcgg                                                                                       >  2:8375979/1‑98 (MQ=0)                             CAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGGTCCGCCCCCGGACCCCC                                                                                  >  2:7344090/1‑101 (MQ=1)                             CAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCC                                                                                  >  2:5667466/1‑101 (MQ=1)                               ACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCcg                                                                                >  1:3899365/1‑99 (MQ=1)                                CTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCCGCCCCCCCGG                                                                               >  2:9199233/1‑101 (MQ=0)                                  GACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTGCGCCCCCGGCCCCCCGGGAc                                                                             >  2:2962940/1‑100 (MQ=0)                                  GACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCCCCGCCCCCGGGCCCCCCGGgt                                                                             >  1:8691465/1‑99 (MQ=0)                                         CATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGCTCCGCCCCCGGACCCCCCGGATATTTGca                                                                      >  2:5842828/1‑99 (MQ=0)                                           TCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGcagc                                                                    >  2:6887425/1‑97 (MQ=0)                                            CGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGGCCCCCGGGGTATTTGcagca                                                                   >  1:5602355/1‑96 (MQ=0)                                            CGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGcagca                                                                   >  2:5587039/1‑96 (MQ=1)                                                                                             CGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCT                 >  2:3503748/1‑101 (MQ=0)                                                                                             CGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCT                 >  2:8791558/1‑101 (MQ=0)                                                                                              GAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTT                >  2:2762612/1‑101 (MQ=0)                                                                                                   GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGG           >  1:7356805/1‑101 (MQ=0)                                                                                                   GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGG           >  2:6479185/1‑101 (MQ=0)                                                                                                     CCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCA         <  2:1883161/101‑1 (MQ=0)                                                                                                        GCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGC      <  2:6016404/101‑1 (MQ=0)                                                                                                         CCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCC     >  1:8015490/1‑101 (MQ=0)                                                                                                          CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG    >  2:472920/1‑101 (MQ=0)                                                                                                          CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG    >  2:8389981/1‑101 (MQ=0)                                                                                                          CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG    >  2:1656953/1‑101 (MQ=0)                                                                                                          CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG    >  1:8844289/1‑101 (MQ=0)                                                                                                           GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC   >  2:6178695/1‑101 (MQ=0)                                                                                                           GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC   >  1:1773115/1‑101 (MQ=0)                                                                                                           GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC   >  2:5437737/1‑101 (MQ=0)                                                                                                           GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC   >  2:2869756/1‑101 (MQ=0)                                                                                                           GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC   >  1:587127/1‑101 (MQ=0)                                                                                                           GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC   >  1:7532949/1‑101 (MQ=0)                                                                                                            GGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGCT  >  2:753010/1‑101 (MQ=0)                                                                                                            GGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGCT  <  1:5106648/101‑1 (MQ=0)                                                                                                     ||||||||                                                                                                      TCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGA.............................................................................................................  >  NC_014034/1699861‑1699960 ............................................................................................................GGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAA.GGGGCGGTTCGGCGTTTCTTGTGCCATCAAAAACAAGGCCTTCGGGGCAAGCCGCT  <  NC_014034/2185978‑2185879 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG