New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	79 (0.210)	45 (0.120)	24/168	23.8	0.20	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2590221	291 (0.640)					intergenic (‑120/‑136)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

GCCTGTCCGCAATATTGCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGG............................................  <  NC_014034/1700062‑1699965 ....................................................................................................................CGCCGAGGCGACCCGGCGGGGGCGCTG  <  NC_014034/2590221‑2590195                                                                                                     ||||||||||||||||                            GCCTGTCCGCAATATTGCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGG.Aat                                          >  2:8974330/1‑99 (MQ=1)                  CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGC                          <  2:8136432/101‑1 (MQ=0)                   GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCC                         <  1:4967174/101‑1 (MQ=0)                    gCGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCG                        <  1:5387878/100‑1 (MQ=0)                    ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCG                        <  2:8036081/101‑1 (MQ=0)                    ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCG                        <  1:9012168/101‑1 (MQ=0)                    ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCG                        <  1:62784/101‑1 (MQ=0)                     CGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGA                       <  2:6322363/101‑1 (MQ=0)                      GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAG                      <  1:8809196/101‑1 (MQ=0)                      GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAG                      >  1:7113376/1‑101 (MQ=0)                       CCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGG                     <  2:4335979/101‑1 (MQ=0)                        CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGC                    <  2:2079774/101‑1 (MQ=0)                         TGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCG                   <  2:3043356/101‑1 (MQ=0)                         TGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCG                   <  2:1707357/101‑1 (MQ=0)                          GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA                  >  2:5020368/1‑101 (MQ=0)                          GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA                  >  2:5895736/1‑101 (MQ=0)                           TTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGAC                 >  2:1848004/1‑101 (MQ=0)                            TTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGAac                >  2:919780/1‑99 (MQ=0)                            TTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACC                <  1:42341/101‑1 (MQ=0)                             TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGG.ATTTCGCCTCGGCTGACGCCGAGGCGACCC               >  1:4606332/1‑101 (MQ=0)                             TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC               >  1:8040650/1‑101 (MQ=0)                             TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC               <  1:3954067/101‑1 (MQ=0)                              CTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCG              <  1:7817913/101‑1 (MQ=0)                              CTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCG              <  1:3602119/101‑1 (MQ=0)                               cCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGG             <  1:6830421/100‑1 (MQ=2)                               TCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGG             <  1:8491094/101‑1 (MQ=2)                               TCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGG             <  1:4736742/101‑1 (MQ=2)                               TCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCCACCCGG             <  1:7108755/101‑1 (MQ=2)                                  GGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCcg          >  1:7944496/1‑99 (MQ=9)                                  GGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGG          <  2:918207/101‑1 (MQ=16)                                   GCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGG         <  2:4632147/101‑1 (MQ=19)                                    CGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGG        <  2:7944172/101‑1 (MQ=255)                                     GATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGG       >  2:8854277/1‑101 (MQ=255)                                     GATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCCGGcg       >  2:3654654/1‑99 (MQ=255)                                      ATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGg      >  1:1462763/1‑100 (MQ=255)                                      ATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGg      >  1:7869955/1‑100 (MQ=255)                                       TTATCCGGTGAAGCCCTCCGATCAGATCGGCATGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgc     <  2:6761602/101‑3 (MQ=255)                                       TTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgc     <  2:6631109/101‑3 (MQ=255)                                       TTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgc     <  1:1569288/101‑3 (MQ=255)                                       TTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCCGGGGgg     >  2:3786096/1‑99 (MQ=255)                                        TATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGggg    >  2:5467597/1‑98 (MQ=255)                                        TATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgct    <  1:6814214/101‑4 (MQ=255)                                        TATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgct    <  1:1448533/101‑4 (MQ=255)                                          TCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgctcc  <  2:395788/101‑6 (MQ=255)                                          TCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgctcc  <  2:3619976/101‑6 (MQ=255)                                          TCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgctcc  <  1:1469556/101‑6 (MQ=255)                                                                                                     ||||||||||||||||                            GCCTGTCCGCAATATTGCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGGG............................................  <  NC_014034/1700062‑1699965 ....................................................................................................................CGCCGAGGCGACCCGGCGGGGGCGCTG  <  NC_014034/2590221‑2590195 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG