New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1723333 =	322 (0.700)	46 (0.100)	5/200	39.2	0.12	intergenic (‑588/+840)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
	?	NC_014034	= 1723929	350 (0.760)					intergenic (‑1184/+244)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
Rejected: Position hash score below cutoff.

GCCGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGG...................................................................................................  <  NC_014034/1723385‑1723333 .....................................................AGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  NC_014034/1723929‑1723831                                                                                                                                                          ggCGGCGCTTCGACGGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGG                                                     <  2:8579780/99‑1 (MQ=12)      gcCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTT                                                <  2:7184303/99‑1 (MQ=17)       GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  2:7139337/101‑1 (MQ=32)       GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  1:3528987/101‑1 (MQ=32)       GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  2:4103887/101‑1 (MQ=32)       GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  1:6719077/101‑1 (MQ=32)       GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  2:1591898/101‑1 (MQ=32)       GCTGCGACAGCCGGAGCGTCTTCCGGAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  2:3009975/101‑1 (MQ=255)        tTTCGACAGCCGGAGCGCCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCG                                              <  2:44340/100‑1 (MQ=12)        CTTCGCCGGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCG                                              <  1:3855447/101‑1 (MQ=12)        CTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCG                                              <  2:4694456/101‑1 (MQ=32)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGgc                                            >  2:4697248/1‑99 (MQ=18)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGgc                                            >  2:3496763/1‑99 (MQ=18)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC                                            <  2:8865829/101‑1 (MQ=32)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC                                            <  2:8702368/101‑1 (MQ=32)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC                                            >  1:1227386/1‑101 (MQ=33)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCCTCGgc                                            >  2:8702911/1‑99 (MQ=18)          TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCCGGGCTTCAGCGGCCGGAGCTTCagc                                            >  2:1556718/1‑98 (MQ=16)           cgcCAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  1:1227933/98‑1 (MQ=17)           CGACAGCCGGGGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  1:8634115/101‑1 (MQ=17)           CGACAGCCGGAGCGGCTTCGGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCGGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  1:2497981/101‑1 (MQ=12)           CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGGCGGAGCTTCGACA                                           >  2:7399366/1‑101 (MQ=18)           CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGCGATGCGACA                                           >  2:6552506/1‑101 (MQ=255)           CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  2:1304296/101‑1 (MQ=32)           CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           >  1:1988442/1‑101 (MQ=33)           CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTCCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  1:4556502/101‑1 (MQ=17)           CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTCCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCAACA                                           <  1:4556501/101‑1 (MQ=12)           CGACAGCCGGAGCGGCTCCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  2:2798635/101‑1 (MQ=17)           CGACAGCCGGAGCCGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  2:8444471/101‑1 (MQ=1)            GACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGGCAG                                          >  2:3323359/1‑101 (MQ=17)            GACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          <  1:1582517/101‑1 (MQ=32)             gCAGCCGGGGCGGCTCCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         <  1:8703316/100‑1 (MQ=12)             gCAGCCGGAGCGGCTGCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         <  2:7293993/100‑1 (MQ=17)             ACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         >  2:2641887/1‑101 (MQ=32)             ACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         >  1:8927886/1‑101 (MQ=32)              CAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGCGCTTCCCCAGCC                                        >  1:8516647/1‑101 (MQ=255)               AGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG                                       >  1:6622991/1‑101 (MQ=32)               AGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG                                       <  1:726431/101‑1 (MQ=32)                GCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACCGCCGG                                      >  2:2528551/1‑101 (MQ=17)                GCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGG                                      <  1:1637094/101‑1 (MQ=32)                           TTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGGTTCGACAGCCGGAGCAGCTTACG                           >  2:1950419/1‑101 (MQ=19)                                     GGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCCGCCGGGGg                 >  2:5523717/1‑100 (MQ=25)                                         CTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTGCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCGTCA             >  2:2104761/1‑101 (MQ=19)                                                GGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGAAGCTTCCGCAGCCGGGGCTTCAGAGGCCG      >  2:2032746/1‑101 (MQ=0)                                                   CGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGCGCAGCTTCCGCAGCCGGGGCTACAGCGGCCGGAG   >  2:2774086/1‑101 (MQ=0)                                                    GGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  >  2:8020245/1‑101 (MQ=1)                                                                                                                                                          GCCGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGG...................................................................................................  <  NC_014034/1723385‑1723333 .....................................................AGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  NC_014034/1723929‑1723831 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG