New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1732866	90 (0.210)	21 (0.050)	2/190	41.6	0.16	intergenic (‑290/‑113)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	2474931 =	135 (0.290)					intergenic (‑94/+32)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCCCC....................................................................................................  >  NC_014034/1732762‑1732866 ....................................................................................................CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCT  >  NC_014034/2474931‑2475030                                                                                                                                                                                                                     GCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGCCCCCCCc                                                                                                    >  2:2483603/1‑100 (MQ=2)        CAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGCCCCCCCcc                                                                                                   >  1:2617009/1‑99 (MQ=9)        CAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGAAGCACCCCCcc                                                                                                   >  2:5632416/1‑99 (MQ=9)            CGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTC                                                                                              <  1:5551296/101‑1 (MQ=1)             GCATCCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCG                                                                                             <  1:1064219/101‑1 (MQ=1)                 GCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTC                                                                                         <  2:2548398/101‑1 (MQ=1)                       CGCGTCAACGGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTT                                                                                   <  1:6620178/101‑1 (MQ=1)                       CGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTT                                                                                   <  2:5392516/101‑1 (MQ=1)                          GTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCC                                                                                <  1:3344173/101‑1 (MQ=1)                               CAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATATGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGG                                                                           <  2:934971/101‑1 (MQ=1)                                 GGCAGGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTTTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCG                                                                         <  1:4492154/101‑1 (MQ=0)                                 GGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCG                                                                         <  1:7822077/101‑1 (MQ=1)                                 GGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCG                                                                         <  2:7740725/101‑1 (MQ=1)                                 GGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCG                                                                         <  2:8963130/101‑1 (MQ=1)                                  GCAAGGGCCCCGCTTTTCCTAGGCAAACTACGCCCTTCTTTCTTTGCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGA                                                                        <  2:929356/101‑1 (MQ=0)                                  GCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGA                                                                        <  1:921973/101‑1 (MQ=1)                                   CAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAa                                                                       >  2:3870616/1‑100 (MQ=1)                                                                                            ggccccccCCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTC               <  1:3612612/93‑1 (MQ=255)                                                                                                 cgcCCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTC          <  2:4729070/98‑1 (MQ=255)                                                                                                 cccCCCCCGGGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTC          <  1:1721038/98‑1 (MQ=255)                                                                                                 cccCCCCCCGGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTC          <  1:928101/98‑1 (MQ=255)                                                                                                 cccCCCCCCGGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTC          <  2:5442521/98‑1 (MQ=255)                                                                                                    CCCCCCGGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGAC       <  1:5462682/101‑1 (MQ=255)                                                                                                                                                                                                               CCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCCCC....................................................................................................  >  NC_014034/1732762‑1732866 ....................................................................................................CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCT  >  NC_014034/2474931‑2475030 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG