New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =496 (1.100)35 (0.080) 3/196 40.9 0.06 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222105 601 (1.310)coding (552/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC...................................  <  NC_014034/222054‑221953
....................................................................................................ACGGATCCGACCGATCCCACGGACCCGACGGACCCGA  <  NC_014034/222105‑222071
                                                                                                                                         
      TCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGATC                                >  2:4513588/1‑101 (MQ=9)
              acCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAT                        <  1:4648459/99‑1 (MQ=0)
                 CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGAACCGACCGATCCC                     >  2:1861633/1‑101 (MQ=0)
                       ATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAg               >  2:6957162/1‑100 (MQ=12)
                         CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC             >  1:299098/1‑101 (MQ=9)
                         CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC             >  1:3156198/1‑101 (MQ=12)
                         CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC             >  2:6013512/1‑101 (MQ=9)
                         CCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC             >  1:5219730/1‑101 (MQ=9)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCa            >  2:4701938/1‑100 (MQ=12)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG            <  1:482453/101‑1 (MQ=12)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG            <  1:481174/101‑1 (MQ=12)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG            <  1:1196741/101‑1 (MQ=12)
                            gCGGCCCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC          <  1:866312/100‑1 (MQ=12)
                            cCGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC          <  2:7736720/100‑1 (MQ=12)
                             CGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACc         <  2:3375352/101‑2 (MQ=12)
                             CGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACG         >  1:2367066/1‑101 (MQ=9)
                              GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG        >  2:6059511/1‑101 (MQ=0)
                              GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG        >  2:5957791/1‑101 (MQ=2)
                              GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG        >  2:9067413/1‑101 (MQ=2)
                              GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG        >  2:3549206/1‑101 (MQ=2)
                              GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG        >  1:7473919/1‑101 (MQ=2)
                              GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGgccg        >  2:312190/1‑97 (MQ=9)
                              GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGcccg        >  1:1238541/1‑97 (MQ=9)
                               GACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA       >  2:4641449/1‑101 (MQ=2)
                                gCCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC      <  2:826833/100‑1 (MQ=2)
                                cCCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC      <  2:7430334/100‑1 (MQ=2)
                                ACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC      >  2:1870261/1‑101 (MQ=0)
                                 CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC     <  2:3617283/101‑1 (MQ=14)
                                  CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC    >  2:1061244/1‑101 (MQ=17)
                                  CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC    <  2:7288369/101‑1 (MQ=17)
                                  CCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC    >  1:6956740/1‑101 (MQ=2)
                                  CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC    <  1:3358066/101‑1 (MQ=14)
                                   CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc   <  2:3233310/101‑2 (MQ=14)
                                    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCcc  >  1:5543695/1‑99 (MQ=14)
                                    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca  >  2:3887897/1‑99 (MQ=11)
                                                                                                                                         
GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC...................................  <  NC_014034/222054‑221953
....................................................................................................ACGGATCCGACCGATCCCACGGACCCGACGGACCCGA  <  NC_014034/222105‑222071

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG