New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221956 =	539 (1.420)	42 (0.110)	10/166	31.8	0.04	coding (701/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222045	1301 (2.840)					coding (612/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

GACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC..................................................................................................  <  NC_014034/222072‑221956 ....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGC  <  NC_014034/222045‑221948                                                                                                                                                                                                                                                acCCCACGGATCCGACCGATCCCACGGATCCTACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAT                                                                                             <  1:2623748/99‑1 (MQ=0)                        acCCCACGGACCCGACCGATCCCACGGACCCGGCCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGAT                                                                                             <  2:5013750/99‑1 (MQ=0)                         TCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATC                                                                                            >  2:4506346/1‑101 (MQ=2)                          CCCACGGATCCGACCGATCGCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                           <  2:3537365/101‑1 (MQ=0)                          CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                           <  1:1045973/101‑1 (MQ=12)                          CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                           <  2:7272727/101‑1 (MQ=12)                           CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                          <  2:5899626/101‑1 (MQ=12)                           CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                          <  1:7657677/101‑1 (MQ=12)                           CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                          >  1:5974502/1‑101 (MQ=9)                           CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                          <  2:8014164/101‑1 (MQ=12)                             ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                        >  2:6476170/1‑101 (MQ=9)                             ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                        <  1:4357780/101‑1 (MQ=12)                             ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                        <  2:5933107/101‑1 (MQ=12)                             ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                        >  2:488963/1‑101 (MQ=12)                             ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAGCCCACGGACCCGACCGAGCCCACGGATCCGAC                                                                                        >  2:8348025/1‑101 (MQ=0)                              CGGATCCGACCGCTCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACa                                                                                       >  1:6515962/1‑100 (MQ=0)                              CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                       <  1:566092/101‑1 (MQ=12)                              CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                       >  2:7405695/1‑101 (MQ=12)                               GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                      >  2:1935227/1‑101 (MQ=0)                               GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                      >  2:209718/1‑101 (MQ=12)                               GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                      <  1:2054494/101‑1 (MQ=12)                               GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                      >  1:7370398/1‑101 (MQ=12)                               GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                      >  1:2568705/1‑101 (MQ=12)                                GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                     >  1:7277098/1‑101 (MQ=12)                                GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                     <  1:5234429/101‑1 (MQ=12)                                GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                     >  2:6922604/1‑101 (MQ=12)                                GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                     >  1:3995239/1‑101 (MQ=12)                                GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGCCCGATCCCACGGATCCGACCGA                                                                                     >  2:8262725/1‑101 (MQ=0)                                 ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAc                                                                                    >  2:6608356/1‑100 (MQ=12)                                 ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAc                                                                                    >  2:8049339/1‑100 (MQ=12)                                 ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCGACCGAc                                                                                    >  2:3202767/1‑100 (MQ=0)                                 ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGCTCCGACCGAc                                                                                    >  1:8950997/1‑100 (MQ=0)                                        CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACag                                                                             >  2:1310376/1‑99 (MQ=9)                                          ATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAg                                                                           >  2:6957162/1‑100 (MQ=12)                                           TCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc                                                                          >  1:1661667/1‑99 (MQ=0)                                                cggctCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC                                                                     <  2:3323719/96‑1 (MQ=12)                                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                    >  1:1812388/1‑101 (MQ=14)                                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                    >  2:6863139/1‑101 (MQ=14)                                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                    >  1:7926905/1‑101 (MQ=14)                                                 GGACCCGACCGGTCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                                    <  1:2217993/101‑3 (MQ=11)                                                  gatCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                                                   >  1:1016566/4‑101 (MQ=2)                                                   ACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAc                                                                  >  2:6394380/1‑100 (MQ=0)                                                   ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACCGcc                                                                  >  2:5157833/1‑99 (MQ=14)                                                    CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAcc                                                                 <  2:3617283/101‑3 (MQ=14)                                                             TCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                        >  1:6804615/1‑101 (MQ=2)                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                       <  2:6411984/101‑1 (MQ=0)                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                       >  2:7581275/1‑101 (MQ=0)                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                       <  2:8161611/101‑1 (MQ=0)                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                       <  1:1010123/101‑1 (MQ=0)                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                       <  2:3998192/101‑1 (MQ=0)                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                       <  2:3868135/101‑1 (MQ=0)                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                      <  1:363708/101‑1 (MQ=0)                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                      <  1:4124743/101‑1 (MQ=0)                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                      <  2:7566619/101‑1 (MQ=0)                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                      <  1:7921798/101‑1 (MQ=0)                                                                CACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                     <  1:4645935/101‑1 (MQ=0)                                                                CACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCca                                                     <  2:5476604/101‑3 (MQ=17)                                                                 ACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                    >  2:3123639/1‑101 (MQ=0)                                                                  CGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg                                                   >  1:8169659/1‑100 (MQ=2)                                                                  CGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg                                                   <  1:6275956/101‑2 (MQ=2)                                                                  CGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg                                                   <  1:5389218/101‑2 (MQ=2)                                                                  CGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg                                                   <  2:1564470/101‑2 (MQ=2)                                                                   GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                  >  1:8030536/1‑99 (MQ=9)                                                                   GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                  >  1:8317794/1‑99 (MQ=9)                                                                   GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                  >  1:3402807/1‑99 (MQ=9)                                                                                                                                                                                                                         GACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC..................................................................................................  <  NC_014034/222072‑221956 ....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGC  <  NC_014034/222045‑221948 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG