New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =NA (NA)64 (0.170) 5/160 35.3 1.00 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222108 NA (NA)coding (549/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC................................................................................................  <  NC_014034/222075‑221956
....................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA  <  NC_014034/222108‑222013
                                                                                                                                                                                                                        
                          acCCCACGGATCCGACCGATCCCACGGATCCTACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAT                                                                                           <  1:2623748/99‑1 (MQ=0)
                          acCCCACGGACCCGACCGATCCCACGGACCCGGCCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGAT                                                                                           <  2:5013750/99‑1 (MQ=0)
                           TCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATC                                                                                          >  2:4506346/1‑101 (MQ=2)
                            CCCACGGATCCGACCGATCGCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                         <  2:3537365/101‑1 (MQ=0)
                            CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                         <  1:1045973/101‑1 (MQ=12)
                            CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                                                                                         <  2:7272727/101‑1 (MQ=12)
                             CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                        >  1:5974502/1‑101 (MQ=9)
                             CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                        <  1:7657677/101‑1 (MQ=12)
                             CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                        <  2:5899626/101‑1 (MQ=12)
                             CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG                                                                                        <  2:8014164/101‑1 (MQ=12)
                              CACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCca                                                                                       <  2:5476604/101‑3 (MQ=17)
                               ACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                      >  2:3123639/1‑101 (MQ=0)
                               ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                      <  1:4357780/101‑1 (MQ=12)
                               ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                      >  2:488963/1‑101 (MQ=12)
                               ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                      <  2:5933107/101‑1 (MQ=12)
                               ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC                                                                                      >  2:6476170/1‑101 (MQ=9)
                               ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAGCCCACGGACCCGACCGAGCCCACGGATCCGAC                                                                                      >  2:8348025/1‑101 (MQ=0)
                                CGGATCCGACCGCTCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACa                                                                                     >  1:6515962/1‑100 (MQ=0)
                                CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                     <  1:566092/101‑1 (MQ=12)
                                CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                                                                                     >  2:7405695/1‑101 (MQ=12)
                                 GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                    >  2:1935227/1‑101 (MQ=0)
                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                    >  2:209718/1‑101 (MQ=12)
                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                    <  1:2054494/101‑1 (MQ=12)
                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                    >  1:7370398/1‑101 (MQ=12)
                                 GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                    >  1:2568705/1‑101 (MQ=12)
                                  GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                   >  1:3995239/1‑101 (MQ=12)
                                  GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                   >  2:6922604/1‑101 (MQ=12)
                                  GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                   >  1:7277098/1‑101 (MQ=12)
                                  GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGA                                                                                   <  1:5234429/101‑1 (MQ=12)
                                  GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGCCCGATCCCACGGATCCGACCGA                                                                                   >  2:8262725/1‑101 (MQ=0)
                                   ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAc                                                                                  >  2:6608356/1‑100 (MQ=12)
                                   ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGAc                                                                                  >  2:8049339/1‑100 (MQ=12)
                                   ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCGACCGAc                                                                                  >  2:3202767/1‑100 (MQ=0)
                                   ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGCTCCGACCGAc                                                                                  >  1:8950997/1‑100 (MQ=0)
                                          CGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACag                                                                           >  2:1310376/1‑99 (MQ=9)
                                            ATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAg                                                                         >  2:6957162/1‑100 (MQ=12)
                                             TCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc                                                                        >  1:1661667/1‑99 (MQ=0)
                                                 ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                    >  2:4941948/1‑101 (MQ=17)
                                                   gcACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGCCGG                                                                  >  1:5475021/3‑101 (MQ=9)
                                                   GGACCCGACCGGTCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGG                                                                  <  1:2217993/101‑1 (MQ=11)
                                                     gCCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC                                                                <  2:826833/100‑1 (MQ=2)
                                                     cCCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC                                                                <  2:7430334/100‑1 (MQ=2)
                                                     ACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAC                                                                >  2:6394380/1‑101 (MQ=0)
                                                     ACCCGACCGATCCCACGGATCCGACCGAGCCCACGGACCCGACCGATCCCACGGATCCGACCGAGCCCACGGATCCGACCGATCCCACGGACCCGACGGAC                                                                >  1:6511973/1‑101 (MQ=12)
                                                      aCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC                                                               <  2:2585148/100‑1 (MQ=0)
                                                      CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC                                                               <  2:3617283/101‑1 (MQ=14)
                                                       CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACTGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                              <  1:6616031/101‑1 (MQ=12)
                                                       CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                              >  2:1061244/1‑101 (MQ=17)
                                                       CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                              <  2:7288369/101‑1 (MQ=17)
                                                       CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC                                                              <  1:3358066/101‑1 (MQ=14)
                                                       CCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                              <  1:7116648/101‑1 (MQ=0)
                                                        cggCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                             <  1:589534/98‑2 (MQ=0)
                                                        CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                             <  2:3233310/101‑2 (MQ=14)
                                                         cACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca                                                            <  2:6145454/100‑3 (MQ=0)
                                                         GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCcc                                                            >  1:5543695/1‑99 (MQ=14)
                                                         GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca                                                            <  1:7293699/101‑3 (MQ=0)
                                                         GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca                                                            >  2:3887897/1‑99 (MQ=11)
                                                          ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                           <  1:8585804/101‑1 (MQ=2)
                                                          ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                           <  1:6652976/101‑1 (MQ=2)
                                                          ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACGGACCCCAC                                                           >  1:3497565/1‑101 (MQ=0)
                                                            CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                         >  1:7847265/1‑99 (MQ=0)
                                                            CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                         >  2:6900136/1‑99 (MQ=0)
                                                            CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                         >  1:3438226/1‑99 (MQ=0)
                                                              ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGAc                                                       >  2:6598010/1‑100 (MQ=0)
                                                                                                                                                                                                                        
CCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC................................................................................................  <  NC_014034/222075‑221956
....................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA  <  NC_014034/222108‑222013

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG