New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221959 =784 (1.710)81 (0.180) 7/200 37.4 0.11 coding (698/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222129 524 (1.140)coding (528/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA................................................................  <  NC_014034/222058‑221959
....................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222129‑222066
                                                                                                                                                                    
atCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAC                                                                 >  2:5765041/3‑101 (MQ=17)
atCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCGACCGAC                                                                 >  2:3202767/3‑101 (MQ=0)
atCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGCTCCGACCGAC                                                                 >  1:8950997/3‑101 (MQ=0)
atCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGAC                                                                 >  1:2124815/3‑101 (MQ=1)
 CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC                                                                <  2:3617283/101‑1 (MQ=14)
  CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                               <  2:7288369/101‑1 (MQ=17)
  CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                               >  2:1061244/1‑101 (MQ=17)
    cACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                             <  2:6145454/100‑1 (MQ=0)
    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCc                                                             >  1:5543695/1‑100 (MQ=14)
    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                             <  1:7293699/101‑1 (MQ=0)
    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                             >  2:3887897/1‑101 (MQ=11)
    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACCGACCCGACCGACCCCACGGACCCGACGGACCCCA                                                             >  1:4024143/1‑101 (MQ=0)
     ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCAC                                                            >  1:2045912/1‑101 (MQ=0)
     ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                            <  1:8585804/101‑1 (MQ=2)
     ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                            <  1:6652976/101‑1 (MQ=2)
     ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACGGACCCCAC                                                            >  1:3497565/1‑101 (MQ=0)
      CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACACGACCGATCCCACGGATCCGACGGACCCCACG                                                           >  1:6252562/1‑101 (MQ=0)
       CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGG                                                          >  1:4437678/1‑101 (MQ=0)
       CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGG                                                          >  1:649226/1‑101 (MQ=0)
       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                          >  1:3438226/1‑101 (MQ=0)
       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                          >  1:7847265/1‑101 (MQ=0)
       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                          >  2:6900136/1‑101 (MQ=0)
        GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                         >  1:3868244/1‑101 (MQ=0)
        GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                         >  2:4840301/1‑101 (MQ=0)
        GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                         >  1:187046/1‑101 (MQ=0)
         gTCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        <  1:7848648/100‑1 (MQ=0)
         cTCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        <  1:129433/100‑1 (MQ=0)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        <  2:8987744/101‑1 (MQ=2)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        >  2:194119/1‑101 (MQ=2)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        >  2:8054522/1‑101 (MQ=2)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        <  1:4502110/101‑1 (MQ=0)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        >  1:4874775/1‑101 (MQ=2)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        >  1:5667419/1‑101 (MQ=2)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        <  1:7601690/101‑1 (MQ=0)
         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                        <  2:5550202/101‑1 (MQ=0)
          TCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACC                                                       >  2:2681858/1‑101 (MQ=255)
          TCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACC                                                       >  1:3892116/1‑101 (MQ=255)
          TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                                       <  1:8591176/101‑1 (MQ=2)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACag                                                      >  2:129433/1‑99 (MQ=2)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      >  1:2124234/1‑101 (MQ=12)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      >  2:3641705/1‑101 (MQ=12)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      <  2:7041950/101‑1 (MQ=12)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      <  1:6077970/101‑1 (MQ=12)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      <  2:7799088/101‑1 (MQ=9)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      >  1:6799529/1‑101 (MQ=12)
           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                      >  2:9143335/1‑101 (MQ=12)
           CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCACACGGACCg                                                      >  2:7248220/1‑100 (MQ=0)
            CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                                     <  2:3489646/101‑1 (MQ=12)
            CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                                     <  2:3126023/101‑1 (MQ=12)
            CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                                     >  1:6302929/1‑101 (MQ=12)
            CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                                     <  1:8245003/101‑1 (MQ=12)
             CACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGA                                                    <  2:4307715/101‑1 (MQ=12)
             CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGA                                                    >  1:7382549/1‑101 (MQ=12)
               CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                  <  1:1553972/101‑1 (MQ=12)
               CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                  >  2:6963537/1‑101 (MQ=12)
                GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACCG                                                 >  1:2727087/1‑101 (MQ=2)
                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                 >  1:7006864/1‑101 (MQ=12)
                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                 >  1:7324776/1‑101 (MQ=12)
                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                 >  2:3132828/1‑101 (MQ=12)
                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                 <  2:1426835/101‑1 (MQ=9)
                 gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGA                                                >  2:6345711/4‑101 (MQ=12)
                 gacCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACGCCACGGACCCGACCGA                                                >  2:5230047/4‑101 (MQ=0)
                 gacCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCCACCGA                                                >  1:8494092/4‑101 (MQ=2)
                 GATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGc                                                >  1:4448923/1‑100 (MQ=12)
                  ATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAc                                               >  2:8615843/1‑100 (MQ=9)
                  ATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAT                                               <  2:1021589/101‑1 (MQ=2)
                   TCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATC                                              <  1:6240361/101‑1 (MQ=2)
                       ACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACACGACGGACCCCACGGACCCGACCGATCCCAC                                          >  2:3436043/1‑101 (MQ=12)
                       ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGACCCCAC                                          >  1:5996393/1‑101 (MQ=12)
                          gacCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGA                                       >  2:8529218/4‑101 (MQ=0)
                          GATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGaa                                       >  2:7151378/1‑99 (MQ=255)
                          GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACGGACCCCACGGA                                       >  1:2692774/1‑101 (MQ=0)
                           acCCCACGGACCCGACCGATCCCACGGACCCGGCCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGAT                                      <  2:5013750/99‑1 (MQ=0)
                           ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGACCCCCCGGAc                                      >  1:7295345/1‑100 (MQ=255)
                                                       aCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC          <  2:2585148/100‑1 (MQ=0)
                                                        CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC         <  1:3358066/101‑1 (MQ=14)
                                                        CCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         <  1:7116648/101‑1 (MQ=0)
                                                         cggCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc        <  1:589534/98‑2 (MQ=0)
                                                         CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc        <  2:3233310/101‑2 (MQ=14)
                                                          GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCcc       >  2:7817904/1‑99 (MQ=17)
                                                               ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGAc  >  2:6598010/1‑100 (MQ=0)
                                                                                                                                                                    
ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA................................................................  <  NC_014034/222058‑221959
....................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222129‑222066

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG