New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221974 =	1518 (3.950)	58 (0.150)	9/168	32.7	0.06	coding (683/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222128	435 (0.950)					coding (529/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC...............................................................................  <  NC_014034/222065‑221974 ............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066                                                                                             ||||||||||||||||                                                                gatctGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                        <  2:4387566/96‑1 (MQ=0)  ccACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAGCCGACGGACCCG                                                                       <  1:6600414/99‑1 (MQ=0)     ccGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                                    <  2:5054563/99‑1 (MQ=0)     CGGACCCGACCGAGCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                                    <  2:2467573/101‑1 (MQ=0)      GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACGCGACCG                                                                   >  2:9617/1‑101 (MQ=0)       GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCTACCca                                                                  >  1:5989885/1‑99 (MQ=0)                   CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAGCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                      <  2:7970243/101‑1 (MQ=12)                      cCGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                                   <  2:7736720/100‑1 (MQ=12)                       CGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                                  <  2:3375352/101‑1 (MQ=12)                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGGCCG                                                 >  2:312190/1‑101 (MQ=9)                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGCCCG                                                 >  1:1238541/1‑101 (MQ=9)                            CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC                                             <  1:3358066/101‑1 (MQ=14)                            CCGACCGATCCCACGGACCCGACCGACCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                                             <  1:5541720/101‑1 (MQ=0)                             CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCC                                            <  2:3233310/101‑1 (MQ=14)                             CGACCGATCCCACGGACCCGACCGATCCCACCGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                            <  2:5296804/101‑1 (MQ=0)                                 CGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGATCCCACGG                                        >  2:4379506/1‑101 (MQ=0)                                  ccTCCCACGGACCCGGCCGATCCCACGGACCCGGCCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGA                                       <  2:2154883/99‑1 (MQ=0)                                  GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGCCCCGACCGACCCCACGGA                                       >  1:3261904/1‑101 (MQ=0)                                   ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGACCCCACGGAc                                      >  1:6544316/1‑100 (MQ=0)                                     CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCGCGGACCCGACCGACCCCACGGATCC                                    >  2:6453554/1‑101 (MQ=2)                                     CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACAGACCC                                    >  2:8800581/1‑101 (MQ=0)                                      ccgCGGACCCGACCGATCCCGCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCc                                   <  1:3593326/98‑2 (MQ=0)                                      CCACGGACCCGACCGCTCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCc                                   <  2:4282907/101‑2 (MQ=0)                                       CACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCca                                  <  2:5476604/101‑3 (MQ=17)                                        tCGGACCCGTCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCAC                                 <  2:7124888/100‑1 (MQ=0)                                        ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGAC                                 <  2:7709590/101‑1 (MQ=9)                                         CGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACC                                <  1:4023740/101‑1 (MQ=0)                                         CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACC                                >  1:406272/1‑101 (MQ=0)                                          GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCTCCCACCG                               >  2:5560023/1‑101 (MQ=2)                                          GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCG                               >  1:2192782/1‑101 (MQ=0)                                           GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGATCCCACCGA                              >  1:8747396/1‑101 (MQ=2)                                            gCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGGCCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGAT                             <  1:1650421/100‑1 (MQ=9)                                            ACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAGCCCACCGAT                             >  1:6374298/1‑101 (MQ=9)                                             CCCGACCGATCCCACGCACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATC                            <  2:2769731/101‑1 (MQ=9)                                               CGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCg                          <  2:967690/101‑2 (MQ=9)                                               CGACCGATCCCACGGACCCGACCGATCCCAAGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCTACCGATCCC                          >  1:2360006/1‑101 (MQ=12)                                                 ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGAC                        >  1:8179169/1‑101 (MQ=0)                                                 ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGAC                        >  1:863427/1‑101 (MQ=0)                                                  CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACG                       <  1:3625964/101‑1 (MQ=0)                                                   CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                      <  1:4723852/101‑1 (MQ=0)                                                   CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                      >  1:4412978/1‑101 (MQ=2)                                                   CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                      <  1:84131/101‑1 (MQ=0)                                                   CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                      >  1:7371330/1‑101 (MQ=0)                                                   CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGG                      <  2:9150179/101‑1 (MQ=2)                                                   CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGACCCCACGG                      >  2:5068688/1‑101 (MQ=12)                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGc                     >  2:306421/1‑100 (MQ=2)                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGc                     >  1:3296334/1‑100 (MQ=2)                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGc                     >  1:3726409/1‑100 (MQ=0)                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGA                     >  2:7895806/1‑101 (MQ=2)                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGA                     <  2:857333/101‑1 (MQ=2)                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGA                     >  1:4973682/1‑101 (MQ=2)                                                     ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGAC                    <  1:172893/101‑1 (MQ=2)                                                       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                  <  2:1682376/101‑1 (MQ=2)                                                       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC                  <  1:4100955/101‑1 (MQ=2)                                                         CACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGA                >  2:7958003/1‑101 (MQ=2)                                                          cCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGAC               <  2:4973522/100‑1 (MQ=0)                                                          ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGAC               >  1:6059929/1‑101 (MQ=2)                                                           CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACc              <  1:1211901/101‑2 (MQ=9)                                                              acCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGAC           >  2:2325711/3‑101 (MQ=2)                                                               aCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC          <  2:2585148/100‑1 (MQ=0)                                                                CCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         <  1:7116648/101‑1 (MQ=0)                                                                 cggCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc        <  1:589534/98‑2 (MQ=0)                                                                  GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACAGACCCcc       >  1:3069413/1‑99 (MQ=0)                                                                       ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGAc  >  2:6598010/1‑100 (MQ=0)                                                                                             ||||||||||||||||                                                                CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC...............................................................................  <  NC_014034/222065‑221974 ............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG