New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 222006	2142 (4.680)	3 (0.010)	3/196	40.9	0.00	coding (651/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	222016 =	2150 (4.690)					coding (641/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCC................................................................................  >  NC_014034/221907‑222006 ....................................................................................................GTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTAGGATCGGTCGGGTCCGTCGGGTCCGTGGGATC  >  NC_014034/222016‑222095                                                                                                                                                                                      CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTGGGGTCCGTGGGATCGGTCGGATCCG                                                                                 <  2:1317708/101‑1 (MQ=14) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 >  1:1272318/1‑101 (MQ=31) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 >  1:1410509/1‑101 (MQ=31) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 >  1:6210164/1‑101 (MQ=31) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 >  2:1535614/1‑101 (MQ=31) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 <  2:3394946/101‑1 (MQ=31) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 >  2:6778899/1‑101 (MQ=31) CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                 <  2:6801802/101‑1 (MQ=31)  ggCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGT                                                                                <  2:4091764/99‑1 (MQ=1)  GCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGCTCCGg                                                                                >  2:8880742/1‑100 (MQ=11)                                              cttgGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCG                                    <  2:3246290/97‑1 (MQ=2)                                                                        CGGTCGGATCCGTGGGATCCGTCGGATCCGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTAGGATCGGTCGGGTCCGTCGGGTCC          <  2:1354651/101‑1 (MQ=255)                                                                                TCCGTGGGATCGGTCGGATCCTTCGGTTCCGTGGGATCGGTCGGTTCCGTGGGATCGGTCGGGTCCGTAGGATCGGTCGGGTCCGTCGGGTCCGTGGGATC  <  2:1084366/101‑1 (MQ=255)                                                                                                                                                                                      CGCCGGATCGCGCTCATCGACGGTGGGCGTCGGATGCGTGGGCTCGGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCC................................................................................  >  NC_014034/221907‑222006 ....................................................................................................GTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTAGGATCGGTCGGGTCCGTCGGGTCCGTGGGATC  >  NC_014034/222016‑222095 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG