New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222016 =2086 (5.420)54 (0.140) 6/168 35.2 0.04 coding (641/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222125 435 (0.950)coding (532/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC..................................................................  <  NC_014034/222087‑222016
........................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGA  <  NC_014034/222125‑222076
                                                                        ||||||||||||||||                                                  
cGACCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCG                                       <  2:7840777/100‑1 (MQ=255)
   tCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATC                                    <  1:3711107/100‑1 (MQ=2)
   tCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATC                                    >  2:8043784/2‑101 (MQ=9)
     ccACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCC                                  <  2:3707280/99‑1 (MQ=19)
     CGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCC                                  <  1:317019/101‑1 (MQ=2)
     CGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCC                                  <  1:2817812/101‑1 (MQ=2)
      cACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCA                                 <  2:4758759/100‑1 (MQ=16)
      GACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCc                                 >  2:471540/1‑100 (MQ=9)
      GACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCA                                 >  1:6712656/1‑101 (MQ=9)
       cCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                <  2:6182121/100‑1 (MQ=12)
       ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                >  2:6704780/1‑101 (MQ=12)
       ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                <  2:6956455/101‑1 (MQ=12)
       ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                >  2:5877212/1‑101 (MQ=12)
       ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                <  1:3549314/101‑1 (MQ=12)
        CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACG                               <  1:8463941/101‑1 (MQ=12)
         GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                              >  2:4505338/1‑101 (MQ=12)
         GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                              >  1:3962023/1‑101 (MQ=16)
         GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                              <  2:834882/101‑1 (MQ=12)
         GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                              <  1:2082538/101‑1 (MQ=12)
          GACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGA                             >  1:7842557/1‑101 (MQ=12)
          GACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGA                             <  1:5301009/101‑1 (MQ=12)
           ACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGAT                            >  1:2620791/1‑101 (MQ=12)
             CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                          <  1:4966004/101‑1 (MQ=12)
             CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                          <  2:4454673/101‑1 (MQ=12)
             CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                          <  2:3095904/101‑1 (MQ=12)
             CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                          <  1:3457574/101‑1 (MQ=12)
              CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                         <  1:1900898/101‑1 (MQ=12)
              CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                         <  1:8329116/101‑1 (MQ=12)
              CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                         <  1:8028755/101‑1 (MQ=12)
              CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                         <  1:3598166/101‑1 (MQ=12)
               GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                        >  1:42572/1‑101 (MQ=9)
               GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                        >  2:5187620/1‑101 (MQ=9)
                ACCGATCCTACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGAC                       <  2:3259621/101‑1 (MQ=12)
                ACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGAC                       <  1:5187789/101‑1 (MQ=12)
                 CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                      <  1:481818/101‑1 (MQ=12)
                 CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                      <  2:7661770/101‑1 (MQ=12)
                  CGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCG                     <  2:3740064/101‑1 (MQ=12)
                  CGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCG                     >  1:1656142/1‑101 (MQ=12)
                   cATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                    <  1:6598270/100‑1 (MQ=12)
                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                    >  2:8201079/1‑101 (MQ=12)
                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                    >  2:8150878/1‑101 (MQ=12)
                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                    >  2:7885755/1‑101 (MQ=12)
                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                    >  1:2637304/1‑101 (MQ=12)
                   GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                    >  1:5896426/1‑101 (MQ=12)
                    ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAc                   >  2:929199/1‑100 (MQ=12)
                    ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAT                   >  2:3443942/1‑101 (MQ=12)
                    ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAT                   >  1:7772635/1‑101 (MQ=12)
                    ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAT                   >  2:2414753/1‑101 (MQ=12)
                     TCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATC                  <  1:2515965/101‑1 (MQ=12)
                      cccACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                 >  1:1716501/4‑101 (MQ=12)
                      cccACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                 <  2:6851899/98‑1 (MQ=12)
                      cccACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                 <  2:6617961/98‑1 (MQ=12)
                      cccACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                 <  2:2770638/98‑1 (MQ=12)
                      cccACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                 >  1:7114776/4‑101 (MQ=16)
                      cccACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                 <  2:8861540/98‑1 (MQ=12)
                       ccACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCgg                <  2:84389/99‑3 (MQ=9)
                        cACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCgc               >  1:2475184/2‑99 (MQ=9)
                        cACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCga               >  2:5611551/2‑99 (MQ=9)
                        cACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCga               >  2:3625682/2‑99 (MQ=9)
                         cCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGAC              <  1:7726686/100‑1 (MQ=0)
                         ACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGAC              <  1:306424/101‑1 (MQ=0)
                         ACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGAC              <  1:2172505/101‑1 (MQ=0)
                          gGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACG             <  1:2842590/100‑1 (MQ=0)
                          CGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACG             >  1:4975358/1‑101 (MQ=0)
                          CGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACG             >  2:3291995/1‑101 (MQ=2)
                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCTACGG            >  1:4961567/1‑101 (MQ=0)
                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGG            >  2:3709629/1‑101 (MQ=2)
                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGG            >  1:7863143/1‑101 (MQ=2)
                           GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGG            >  2:7501973/1‑101 (MQ=0)
                            GACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGA           >  1:6271971/1‑101 (MQ=2)
                              CCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACC         <  2:5725559/101‑1 (MQ=9)
                              CCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACC         >  2:1345102/1‑101 (MQ=12)
                               CCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCC        <  2:1297065/101‑1 (MQ=12)
                                CGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCG       <  2:6835174/101‑1 (MQ=12)
                                 GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGc      >  1:4650710/1‑100 (MQ=16)
                                 GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGA      >  1:4097776/1‑101 (MQ=12)
                                  cCCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGAC     <  2:555019/100‑1 (MQ=12)
                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGAC     <  1:1870321/101‑1 (MQ=12)
                                  ACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGAC     >  1:7495171/1‑101 (MQ=16)
                                   CCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACc    <  2:3258998/101‑2 (MQ=12)
                                   CCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACc    >  1:7300611/1‑100 (MQ=16)
                                   CCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACc    <  1:7886088/101‑2 (MQ=12)
                                    CGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACcg   >  2:7830559/1‑99 (MQ=12)
                                     GATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACGGA  >  2:1847804/1‑101 (MQ=12)
                                                                        ||||||||||||||||                                                  
GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC..................................................................  <  NC_014034/222087‑222016
........................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGA  <  NC_014034/222125‑222076

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG