New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222079 =559 (1.560)22 (0.060) 8/156 32.2 0.04 coding (578/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 397 (0.870)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

TGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC.....................................................................................  <  NC_014034/222175‑222079
.......................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066
                                                                                                 ||||||||||||||||||||||                                                               
TGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAc                                                                                   >  2:1509637/1‑100 (MQ=1)
   GTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACCGACCCGACGGATCCC                                                                                >  2:8601239/1‑101 (MQ=0)
                                         ccggcCCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                          <  1:3246389/96‑1 (MQ=255)
                                         acggaCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCAC                                          >  2:4407002/6‑101 (MQ=9)
                                         acggaCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCCAC                                          >  2:6663170/6‑101 (MQ=9)
                                            gaCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGA                                       >  2:8529218/3‑101 (MQ=0)
                                              CCCGACGGACCCGACCGATCCCACCGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc                                     <  2:4770124/101‑3 (MQ=0)
                                                                       GATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGA            >  1:1592576/1‑101 (MQ=12)
                                                                         cCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC          <  2:3617283/100‑1 (MQ=14)
                                                                         aCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC          <  2:2585148/100‑1 (MQ=0)
                                                                         TCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACC          >  2:4885527/1‑101 (MQ=12)
                                                                          CCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCC         >  1:6226219/1‑101 (MQ=0)
                                                                          CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         <  2:7288369/101‑1 (MQ=17)
                                                                          CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         >  2:1061244/1‑101 (MQ=17)
                                                                          CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC         <  1:3358066/101‑1 (MQ=14)
                                                                          CCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC         <  1:7116648/101‑1 (MQ=0)
                                                                           cggCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc        <  1:589534/98‑2 (MQ=0)
                                                                           CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc        <  2:3233310/101‑2 (MQ=14)
                                                                            cACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca       <  2:6422927/100‑3 (MQ=0)
                                                                            cACCGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCca       <  2:1194454/100‑3 (MQ=0)
                                                                            GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCcc       >  2:7817904/1‑99 (MQ=17)
                                                                            GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCTCCGACCGATCCCACGGATCCGACGAACCCca       >  2:8237303/1‑99 (MQ=0)
                                                                             ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCGACGGACCgcac      >  2:2722179/1‑97 (MQ=0)
                                                                               CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGCTCCGACGGACCCcccgc    >  1:1995902/1‑96 (MQ=0)
                                                                                 ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGAc  >  2:6598010/1‑100 (MQ=0)
                                                                                                 ||||||||||||||||||||||                                                               
TGGGTCTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC.....................................................................................  <  NC_014034/222175‑222079
.......................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG