New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222085 =472 (1.430)93 (0.280) 12/144 27.8 0.18 coding (572/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222110 373 (0.810)coding (547/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA.......................................................................  <  NC_014034/222135‑222085
...............................................................................CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCG  <  NC_014034/222110‑222068
                                                   ||||||||||||||||||||||||||||                                           
caccgatCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCA                       <  2:7671304/94‑1 (MQ=2)
 gccgaCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCAC                      <  2:6613304/96‑1 (MQ=2)
  ccgaCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACG                     <  2:7959253/97‑1 (MQ=2)
  ccgaCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACG                     <  2:4877265/97‑1 (MQ=2)
  ccgGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACG                     <  2:8720093/98‑1 (MQ=2)
   ccatCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGGCCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGG                    <  1:2951762/97‑1 (MQ=0)
     atCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGCCCGATCCCACGGAC                  >  1:6788038/3‑101 (MQ=2)
     atCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGACCCCACGGAC                  >  2:7279231/3‑101 (MQ=2)
     atCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCCACCGATCCCACGGAC                  >  1:3940306/3‑101 (MQ=2)
     atCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAC                  <  1:1066719/99‑1 (MQ=21)
      tCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGCCGGACCCCACGGACCCGACCGATCCCACGGACC                 <  1:6449217/100‑1 (MQ=2)
      tCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                 <  2:4712492/100‑1 (MQ=17)
      gCCCACGGACCCGACCGAGCCCACGGAGCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                 <  1:4114055/100‑1 (MQ=255)
      CCCCTCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                 <  2:2202553/101‑1 (MQ=2)
       CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCAAGGACCC                >  2:6667188/1‑101 (MQ=12)
       CCCACGGACCCGACCGATCCCACGGACCCGACTGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC                <  1:4677805/101‑1 (MQ=2)
       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC                >  1:1216581/1‑101 (MQ=2)
       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC                >  2:3693435/1‑101 (MQ=0)
       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC                >  1:7656288/1‑101 (MQ=2)
        CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCAGGGACCCG               <  2:8030196/101‑1 (MQ=9)
        CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCGCACGGACCCc               >  1:8109724/1‑100 (MQ=12)
        CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG               <  2:1452050/101‑1 (MQ=2)
        CCACGGACCCGACCGATCCCACGGAACCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG               <  2:1263910/101‑1 (MQ=12)
         CACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGA              >  2:4531272/1‑101 (MQ=2)
         CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGATCCGACGGATCCCACGGACCCGc              >  2:4073234/1‑100 (MQ=25)
         CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCCCGGACCCGA              >  1:2351577/1‑101 (MQ=12)
         CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGCCCCGc              >  2:214625/1‑100 (MQ=9)
         CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAGCCGA              >  2:476991/1‑101 (MQ=0)
         CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCGGA              >  1:5636402/1‑101 (MQ=9)
          cccGACCCGACCGACCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  2:5798422/98‑1 (MQ=255)
          cCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  2:1012708/100‑1 (MQ=14)
          cCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  2:564286/100‑1 (MQ=2)
          ACGGGCCCGACCGATCCCACGGATCCGCCCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  1:1865255/101‑1 (MQ=255)
          ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC             >  1:5675118/1‑101 (MQ=17)
          ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC             >  2:7874247/1‑101 (MQ=17)
          ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC             >  2:4941948/1‑101 (MQ=17)
          ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGCCCGATCCCACGGACACGAC             >  2:8475900/1‑101 (MQ=255)
          ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             >  2:6480124/1‑101 (MQ=17)
          ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  1:7632359/101‑1 (MQ=2)
          ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCAAC             >  1:1226659/1‑101 (MQ=0)
          ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  1:2243798/101‑1 (MQ=0)
          ACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC             <  2:7432347/101‑1 (MQ=0)
           ctGACCCTACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  2:8058766/99‑2 (MQ=9)
           CGGACCCGACCGATCCCACGGATCCGAGCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  1:2811041/101‑2 (MQ=2)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGCCCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAgc            >  1:4998485/1‑99 (MQ=12)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGCCCCGACc            >  1:8576448/1‑100 (MQ=9)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  2:4874615/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  2:3158251/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  1:258105/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  2:3940191/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  1:8476280/101‑2 (MQ=14)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  2:5171734/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            >  2:8583588/1‑100 (MQ=14)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACACCACGGACCCGACCGATCCCACGGACCCGACc            >  1:7350778/1‑100 (MQ=9)
           CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGCCCCGACc            >  2:4965844/1‑100 (MQ=9)
           CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc            <  1:2025889/101‑2 (MQ=9)
           CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGACCCCACGGACCCGACc            >  1:7503350/1‑100 (MQ=9)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAGCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACGc           >  1:5000887/1‑100 (MQ=16)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  2:5021763/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  1:183864/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  2:7669770/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  1:2285855/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  2:8051878/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  1:2034971/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  2:3025155/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  2:2614224/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           >  1:7432901/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcc           >  1:1263942/1‑99 (MQ=14)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCCACcg           >  1:7695191/1‑99 (MQ=2)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGCACCCGACCGATCCCACGGAGCCGACcg           >  1:6183979/1‑99 (MQ=9)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGATCCGACCGATCCGACGGACCCGACGG           >  2:382831/1‑101 (MQ=9)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           <  1:2003664/101‑3 (MQ=9)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           <  1:3285669/101‑3 (MQ=9)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           <  1:7670097/101‑3 (MQ=12)
            GGACCCGACCGACCCCACGGATCCGACCGACCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg           <  2:204858/101‑3 (MQ=255)
             GACCGGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA          <  1:7280605/101‑1 (MQ=0)
             GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA          >  1:3295167/1‑101 (MQ=0)
             GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA          >  1:839542/1‑101 (MQ=0)
             GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA          >  1:4575028/1‑101 (MQ=0)
             GACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA          >  1:7541929/1‑101 (MQ=16)
             GACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA          >  1:5407987/1‑101 (MQ=16)
              ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAt         <  1:2593981/101‑2 (MQ=0)
              ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAt         >  1:1202528/1‑100 (MQ=0)
               CCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAtc        <  2:5608250/101‑3 (MQ=0)
                CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGcccgatcc       >  1:646943/1‑93 (MQ=0)
                CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC       >  1:3687849/1‑101 (MQ=0)
                CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC       >  1:6065857/1‑101 (MQ=0)
                 CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCa      >  2:1824507/1‑100 (MQ=0)
                  GACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGCCCCGACGGATCCca     >  2:3843438/1‑99 (MQ=255)
                    CCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACGGATCCCACg   >  2:1555725/1‑100 (MQ=0)
                     CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACGGATCCCACgc  >  2:4015146/1‑99 (MQ=0)
                     CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACgg  >  1:649226/1‑99 (MQ=0)
                     CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACgg  >  1:4437678/1‑99 (MQ=0)
                                                   ||||||||||||||||||||||||||||                                           
CACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA.......................................................................  <  NC_014034/222135‑222085
...............................................................................CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCG  <  NC_014034/222110‑222068

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG