New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	143 (0.320)	74 (0.160)	5/198	39.0	0.34	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2995639	144 (0.310)					intergenic (+179/+41)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

CGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.G....................................................................................................  >  NC_014034/2330075‑2330175 ......................................................................................................GGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTG  <  NC_014034/2995639‑2995540                                                                                                                                                                                                              GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGG.GG                                                                                                     >  1:2193962/1‑101 (MQ=1)  GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GG                                                                                                     >  1:6659054/1‑101 (MQ=1)  GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GG                                                                                                     >  1:8081452/1‑101 (MQ=1)  GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GG                                                                                                     >  2:7910902/1‑101 (MQ=1)  GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GG                                                                                                     <  1:4525600/101‑1 (MQ=1)   GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGG                                                                                                    >  1:1800644/1‑101 (MQ=1)   GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGG                                                                                                    >  1:3547814/1‑101 (MQ=1)    gTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGG                                                                                                   <  2:8223328/100‑1 (MQ=1)    CTTGTCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGG                                                                                                   <  2:2397268/101‑1 (MQ=1)    CTTGGCCTCCGCCAAGGGCGGCAACGGCGCTCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGG                                                                                                   <  1:9054214/101‑1 (MQ=1)    CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGG                                                                                                   <  1:6937821/101‑1 (MQ=1)    CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGG                                                                                                   >  2:331285/1‑101 (MQ=1)    CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.CGGC.GGGG                                                                                                   >  2:7128781/1‑101 (MQ=1)     TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGg                                                                                                  <  1:6332450/101‑2 (MQ=1)      TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgc                                                                                                 <  1:3210535/101‑3 (MQ=1)      TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgc                                                                                                 <  2:411591/101‑3 (MQ=1)      TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgc                                                                                                 <  2:8317481/101‑3 (MQ=1)      TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgc                                                                                                 >  1:5414946/1‑99 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGggg                                                                                                >  1:8501442/1‑98 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGggg                                                                                                >  1:4350971/1‑98 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGggc                                                                                                >  1:2819837/1‑98 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgct                                                                                                <  1:595490/101‑4 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgct                                                                                                <  1:8159284/101‑4 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgct                                                                                                <  1:8442233/101‑4 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgct                                                                                                <  1:44964/101‑4 (MQ=1)       GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgct                                                                                                <  2:7077336/101‑4 (MQ=1)        GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgggg                                                                                               >  1:678824/1‑97 (MQ=1)        GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctc                                                                                               <  2:8853512/101‑5 (MQ=1)        GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctc                                                                                               <  2:7075133/101‑5 (MQ=1)        GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctc                                                                                               <  1:4140367/101‑5 (MQ=1)         CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:3034954/101‑6 (MQ=1)         CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:7270785/101‑6 (MQ=1)         CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:2251815/101‑6 (MQ=1)         CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  2:1165417/101‑6 (MQ=1)         CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  2:3619556/101‑6 (MQ=1)         CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:9024108/101‑6 (MQ=1)          CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGC.GGGGgggcc                                                                                              >  2:2377915/1‑96 (MQ=0)          CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG                                                                                              >  1:7282681/1‑101 (MQ=1)          CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG                                                                                              <  2:6472398/101‑1 (MQ=1)            CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCC                                                                                            <  1:9048058/101‑1 (MQ=1)            CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCC                                                                                            <  1:2389370/101‑1 (MQ=1)            CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgcgccccc                                                                                           >  1:4104406/1‑93 (MQ=11)            CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.CGGGgggccccc                                                                                           >  1:8197810/1‑93 (MQ=0)             CGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCC                                                                                           <  2:1407642/101‑1 (MQ=1)             CGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCC                                                                                           <  1:4900272/101‑1 (MQ=1)             CGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCC                                                                                           <  2:3628182/101‑1 (MQ=1)              GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCC                                                                                          <  2:6895057/101‑1 (MQ=1)               CCAAGGGCGGCGACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:5068086/101‑1 (MQ=1)               CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGGTCCGCCCCC                                                                                         >  2:4844510/1‑101 (MQ=1)               CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  1:2828120/101‑1 (MQ=1)               CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:3396214/101‑1 (MQ=1)               CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:4970720/101‑1 (MQ=1)               CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  1:6383029/101‑1 (MQ=1)                CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCg                                                                                        <  1:3379124/101‑2 (MQ=1)                CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.CGGCGGGGGCTCCGCCCCCC                                                                                        >  2:7866671/1‑101 (MQ=1)                 AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       >  1:4097857/1‑99 (MQ=1)                 AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       <  2:282209/101‑3 (MQ=1)                 AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       <  2:1814656/101‑3 (MQ=1)                 AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       >  2:2876583/1‑99 (MQ=1)                  AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgcc                                                                                      >  1:1704152/1‑98 (MQ=1)                  AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgca                                                                                      >  1:3020050/1‑98 (MQ=1)                  AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCCCCCCCCcc                                                                                      >  1:3512954/1‑99 (MQ=0)                    GGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACC                                                                                   <  2:286078/101‑1 (MQ=1)                    GGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACC                                                                                   <  2:1120287/101‑1 (MQ=1)                    GGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACC                                                                                   <  1:5686942/101‑1 (MQ=1)                     GCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCC                                                                                  <  1:2634872/101‑1 (MQ=1)                      CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCC                                                                                 <  2:8025779/101‑1 (MQ=1)                      CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCC                                                                                 >  1:4576514/1‑101 (MQ=1)                       GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                >  2:4802253/1‑101 (MQ=1)                       GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:2222644/101‑1 (MQ=1)                       GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:1944844/101‑1 (MQ=1)                       GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  1:9201157/101‑1 (MQ=1)                       GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:8294654/101‑1 (MQ=1)                       GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  1:6341308/101‑1 (MQ=1)                                                                                                                                                                                                             CGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.G....................................................................................................  >  NC_014034/2330075‑2330175 ......................................................................................................GGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTG  <  NC_014034/2995639‑2995540 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG