New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2330296 =	168 (0.410)	52 (0.130)	3/178	39.2	0.29	intergenic (+271/+41)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2880569	91 (0.200)					coding (1016/1053 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
Rejected: Position hash score below cutoff.

GACCGGGGAACAGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGC....................................................................................................  <  NC_014034/2330406‑2330296 ....................................................................................................CCGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGAAGCAAGATGAAAAGGAAGGGGACGGGCTTTGGCTGCGATTGACGGGCTGCCGCCCTTGCGCGAGGTGATCGC  <  NC_014034/2880569‑2880470                                                                                                                                                                                                                                AGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCT                                                                                                     >  2:2044929/1‑101 (MQ=1)             GCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTC                                                                                                    >  2:1918051/1‑101 (MQ=1)             GCGGGTGACCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTC                                                                                                    <  2:8301907/101‑1 (MQ=1)              gGGGTGATCCCGAAGAAGGCGCCCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                   <  2:8748282/100‑2 (MQ=1)              CGGGTTATCCCGAAGAAGGCGACCTTCGGATCCCTGCCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                   <  2:449526/101‑2 (MQ=0)              CGGGTGATCCCGAAGAAGGCGCCCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGTTTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                   <  2:7882979/101‑2 (MQ=0)              CGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                   >  1:2442620/1‑100 (MQ=1)              CGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                   >  2:2243939/1‑100 (MQ=1)                GGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGC                                                                                                 >  1:5679867/1‑101 (MQ=1)                 GTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCC                                                                                                >  1:1405047/1‑101 (MQ=1)                  TGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCC                                                                                               >  1:3998006/1‑101 (MQ=1)                  TGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCC                                                                                               >  1:174713/1‑101 (MQ=1)                  TGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCC                                                                                               >  2:6609037/1‑101 (MQ=1)                   GATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCC                                                                                              >  2:7358390/1‑101 (MQ=1)                   GATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCC                                                                                              >  2:3778070/1‑101 (MQ=1)                     TCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCG                                                                                            >  2:1030154/1‑101 (MQ=1)                     TCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCGCCGCCCCCG                                                                                            >  1:304192/1‑101 (MQ=1)                       CCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGA                                                                                          >  2:8469746/1‑101 (MQ=1)                       CCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGAGGGCTCCGCCCCCGGA                                                                                          >  2:7949400/1‑101 (MQ=1)                        CGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGAC                                                                                         >  1:5555653/1‑101 (MQ=1)                         GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                        >  1:7414075/1‑101 (MQ=1)                         GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                        >  2:5644090/1‑101 (MQ=1)                         GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                        >  1:2986037/1‑101 (MQ=1)                          AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                       >  2:6494659/1‑101 (MQ=1)                          AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                       >  2:6091866/1‑101 (MQ=1)                          AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                       >  1:3963894/1‑101 (MQ=1)                           AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGCCCCC                                                                                      >  1:7322/1‑101 (MQ=1)                           AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCC                                                                                      >  2:4576452/1‑101 (MQ=1)                           AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCCTCGCCCCCGGACCCC                                                                                      >  2:5351079/1‑101 (MQ=14)                           AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCCCCGGGGGCTCCGCCCCCGGACTCC                                                                                      >  2:9128374/1‑101 (MQ=0)                            GAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCC                                                                                     >  2:7536419/1‑101 (MQ=1)                            GAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCC                                                                                     >  2:3327024/1‑101 (MQ=1)                             AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCG                                                                                    >  1:2306776/1‑101 (MQ=1)                             AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCG                                                                                    >  2:3389751/1‑101 (MQ=1)                             AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCG                                                                                    >  1:7182019/1‑101 (MQ=1)                             AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCGCCGCCCCCGGACCCCCG                                                                                    >  2:3884057/1‑101 (MQ=1)                              AGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGG                                                                                   >  1:3622330/1‑101 (MQ=1)                              AGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGG                                                                                   >  1:4263030/1‑101 (MQ=1)                               GGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGG                                                                                  >  1:7144184/1‑101 (MQ=11)                                     CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                            >  2:2350690/1‑101 (MQ=1)                                     CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                            >  2:4819042/1‑101 (MQ=1)                                     CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                            >  2:8231772/1‑101 (MQ=1)                                     CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                            >  2:1662097/1‑101 (MQ=1)                                     CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCGGGATCTTT                                                                            >  2:4452820/1‑101 (MQ=0)                                     CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCAGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                            >  1:4562716/1‑101 (MQ=0)                                      TTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCGGGATCTTTG                                                                           >  2:7300537/1‑101 (MQ=0)                                       TCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGg                                                                          >  1:5332044/1‑100 (MQ=11)                                        CGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGgc                                                                         >  1:3913409/1‑99 (MQ=14)                                         GGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATccttggcc                                                                        >  2:1072188/1‑93 (MQ=9)                                          GATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGggcc                                                                       >  2:1800591/1‑97 (MQ=0)                                          GATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGgccc                                                                       >  1:2600145/1‑97 (MQ=18)                                           ATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGgcccc                                                                      >  2:631264/1‑96 (MQ=21)                                                                                                                                                                                                                     GACCGGGGAACAGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGC....................................................................................................  <  NC_014034/2330406‑2330296 ....................................................................................................CCGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGAAGCAAGATGAAAAGGAAGGGGACGGGCTTTGGCTGCGATTGACGGGCTGCCGCCCTTGCGCGAGGTGATCGC  <  NC_014034/2880569‑2880470 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG