New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2330296 =	168 (0.400)	52 (0.120)	3/182	39.6	0.23	intergenic (+271/+41)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	3329495 =	177 (0.390)					intergenic (‑30/+39)	argF/argD	ornithine carbamoyltransferase/acetylornithine aminotransferase
Rejected: Position hash score below cutoff.

CCGGGGAACAGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGC...................................................................................................  <  NC_014034/2330404‑2330296 ....................................................................................................GCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGC  >  NC_014034/3329495‑3329593                                                                                                                                                                                                                           AGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCT                                                                                                    >  2:2044929/1‑101 (MQ=1)           GCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTC                                                                                                   >  2:1918051/1‑101 (MQ=1)           GCGGGTGACCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTC                                                                                                   <  2:8301907/101‑1 (MQ=1)            gGGGTGATCCCGAAGAAGGCGCCCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                  <  2:8748282/100‑2 (MQ=1)            CGGGTTATCCCGAAGAAGGCGACCTTCGGATCCCTGCCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                  <  2:449526/101‑2 (MQ=0)            CGGGTGATCCCGAAGAAGGCGCCCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGTTTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                  <  2:7882979/101‑2 (MQ=0)            CGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                  >  1:2442620/1‑100 (MQ=1)            CGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCc                                                                                                  >  2:2243939/1‑100 (MQ=1)              GGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGC                                                                                                >  1:5679867/1‑101 (MQ=1)               GTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCC                                                                                               >  1:1405047/1‑101 (MQ=1)                TGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCC                                                                                              >  1:3998006/1‑101 (MQ=1)                TGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCC                                                                                              >  1:174713/1‑101 (MQ=1)                TGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCC                                                                                              >  2:6609037/1‑101 (MQ=1)                 GATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCC                                                                                             >  2:7358390/1‑101 (MQ=1)                 GATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCC                                                                                             >  2:3778070/1‑101 (MQ=1)                   TCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCG                                                                                           >  2:1030154/1‑101 (MQ=1)                   TCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCGCCGCCCCCG                                                                                           >  1:304192/1‑101 (MQ=1)                     CCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGA                                                                                         >  2:8469746/1‑101 (MQ=1)                     CCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGAGGGCTCCGCCCCCGGA                                                                                         >  2:7949400/1‑101 (MQ=1)                      CGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGAC                                                                                        >  1:5555653/1‑101 (MQ=1)                       GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                       >  1:7414075/1‑101 (MQ=1)                       GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                       >  2:5644090/1‑101 (MQ=1)                       GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                       >  1:2986037/1‑101 (MQ=1)                        AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                      >  2:6494659/1‑101 (MQ=1)                        AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                      >  2:6091866/1‑101 (MQ=1)                        AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                      >  1:3963894/1‑101 (MQ=1)                         AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGCCCCC                                                                                     >  1:7322/1‑101 (MQ=1)                         AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCC                                                                                     >  2:4576452/1‑101 (MQ=1)                         AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCCTCGCCCCCGGACCCC                                                                                     >  2:5351079/1‑101 (MQ=14)                         AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCCCCGGGGGCTCCGCCCCCGGACTCC                                                                                     >  2:9128374/1‑101 (MQ=0)                          GAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCC                                                                                    >  2:7536419/1‑101 (MQ=1)                          GAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCC                                                                                    >  2:3327024/1‑101 (MQ=1)                           AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCG                                                                                   >  1:2306776/1‑101 (MQ=1)                           AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCG                                                                                   >  2:3389751/1‑101 (MQ=1)                           AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCG                                                                                   >  1:7182019/1‑101 (MQ=1)                           AAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCGCCGCCCCCGGACCCCCG                                                                                   >  2:3884057/1‑101 (MQ=1)                            AGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGG                                                                                  >  1:3622330/1‑101 (MQ=1)                            AGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGG                                                                                  >  1:4263030/1‑101 (MQ=1)                             GGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGG                                                                                 >  1:7144184/1‑101 (MQ=11)                                   CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                           >  2:2350690/1‑101 (MQ=1)                                   CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                           >  2:4819042/1‑101 (MQ=1)                                   CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                           >  2:8231772/1‑101 (MQ=1)                                   CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                           >  2:1662097/1‑101 (MQ=1)                                   CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCGGGATCTTT                                                                           >  2:4452820/1‑101 (MQ=0)                                   CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCAGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                           >  1:4562716/1‑101 (MQ=0)                                    TTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCGGGATCTTTG                                                                          >  2:7300537/1‑101 (MQ=0)                                     TCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGg                                                                         >  1:5332044/1‑100 (MQ=11)                                      CGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGgc                                                                        >  1:3913409/1‑99 (MQ=14)                                       GGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATccttggcc                                                                       >  2:1072188/1‑93 (MQ=9)                                        GATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGggcc                                                                      >  2:1800591/1‑97 (MQ=0)                                        GATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGgccc                                                                      >  1:2600145/1‑97 (MQ=18)                                         ATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGgcccc                                                                     >  2:631264/1‑96 (MQ=21)                                                                                                                                                                                                                  CCGGGGAACAGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGC...................................................................................................  <  NC_014034/2330404‑2330296 ....................................................................................................GCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGC  >  NC_014034/3329495‑3329593 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG