BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	235596 =	286 (0.620)	62 (0.140)	5/200	39.2	0.22	intergenic (+25/+186)	RCAP_rcc00200/RCAP_rcc00201	MarR family transcriptional regulator/adenine‑specific DNA‑methyltransferase
*	?	NC_014034	900797 =	166 (0.360)	62 (0.140)	5/200	39.2	0.22	intergenic (‑126/‑161)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.


GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGG...................................................................................................  <  NC_014034/235695‑235596


....................................................................................................GCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA  >  NC_014034/900797‑900893


GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGG                                                                                                    >  1:6280530/1‑101 (MQ=255)


GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGG                                                                                                    >  2:2204819/1‑101 (MQ=255)


GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGG                                                                                                    >  1:4321814/1‑101 (MQ=255)


GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGG                                                                                                    >  1:4398620/1‑101 (MQ=255)


 TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAACCCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   <  2:6309541/101‑2 (MQ=255)


 TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGGGGGGGg                                                                                                   >  2:4242625/1‑100 (MQ=255)


 TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   <  1:8278296/101‑2 (MQ=255)


 TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   >  1:6075564/1‑100 (MQ=255)


 TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   >  1:9077462/1‑100 (MQ=255)


  GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCGCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  2:4356634/1‑99 (MQ=255)


  GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  1:8979263/1‑99 (MQ=255)


  GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  2:2366903/1‑99 (MQ=255)


  GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  2:9097120/1‑99 (MQ=255)


  GAAGACTGCATATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  1:4475040/1‑99 (MQ=255)


   AAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcg                                                                                                 >  2:1320114/1‑98 (MQ=255)


   AAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcg                                                                                                 >  1:7899701/1‑98 (MQ=255)


    AGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcgg                                                                                                <  1:2848309/101‑5 (MQ=255)


    AGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcgg                                                                                                <  2:8198576/101‑5 (MQ=255)


     GACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcgga                                                                                               <  1:1086423/101‑6 (MQ=255)


     GACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcgga                                                                                               >  1:6277391/1‑96 (MQ=255)


      ACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaa                                                                                              >  2:2885787/1‑95 (MQ=255)


      ACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaa                                                                                              <  2:6008291/101‑7 (MQ=255)


      ACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaa                                                                                              <  1:1953543/101‑7 (MQ=255)


       CTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaa                                                                                             <  1:2459785/101‑8 (MQ=255)


       CTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaa                                                                                             >  2:4128014/1‑94 (MQ=255)


        TGCGTATTTGAGTCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                            <  1:779566/101‑9 (MQ=255)


        TGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                            >  2:6972557/1‑93 (MQ=255)


        TGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                            <  2:8383964/101‑9 (MQ=255)


        TGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                            <  1:765594/101‑9 (MQ=255)


        TGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                            <  2:8978842/101‑9 (MQ=255)


         GCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaagc                                                                                           <  2:6280290/101‑10 (MQ=255)


          CGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaagcc                                                                                          >  1:1240418/1‑91 (MQ=255)


          CGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaagcc                                                                                          >  1:5848288/1‑91 (MQ=2)


          CGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaagcc                                                                                          >  2:6542236/1‑91 (MQ=2)


          CGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaagcc                                                                                          >  2:2404022/1‑91 (MQ=255)


                                                                                       cGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA             <  1:8898209/100‑1 (MQ=35)


                                                                                       cGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA             >  1:5150192/2‑101 (MQ=35)


                                                                                       cGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA             >  1:6354725/2‑101 (MQ=35)


                                                                                        GGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC            <  2:7282371/101‑1 (MQ=34)


                                                                                        GGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC            >  2:1271103/1‑101 (MQ=34)


                                                                                        GGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC            >  2:6968161/1‑101 (MQ=34)


                                                                                         GGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT           <  1:7249450/101‑1 (MQ=34)


                                                                                         GGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT           <  1:9199530/101‑1 (MQ=34)


                                                                                          GGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT          >  1:8776875/1‑101 (MQ=34)


                                                                                           GGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTG         >  2:657671/1‑101 (MQ=34)


                                                                                           GGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTG         >  2:1917355/1‑101 (MQ=34)


                                                                                            GTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGG        >  1:7262662/1‑101 (MQ=33)


                                                                                             gGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGG       <  2:6861146/100‑1 (MQ=14)


                                                                                             TGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGG       >  2:4741504/1‑101 (MQ=32)


                                                                                              GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC      >  2:6730690/1‑101 (MQ=31)


                                                                                              GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC      >  2:7562816/1‑101 (MQ=31)


                                                                                              GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC      >  2:7701646/1‑101 (MQ=31)


                                                                                              GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC      >  1:2574215/1‑101 (MQ=31)


                                                                                               CGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT     <  2:1628643/101‑1 (MQ=11)


                                                                                               CGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT     >  1:3322424/1‑101 (MQ=11)


                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    <  1:3855884/101‑1 (MQ=1)


                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  1:4519096/1‑101 (MQ=1)


                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  2:7085448/1‑101 (MQ=1)


                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  1:8778497/1‑101 (MQ=1)


                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  2:4503272/1‑101 (MQ=1)


                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  2:4473312/1‑101 (MQ=1)


                                                                                                  GGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA  <  1:8643106/101‑1 (MQ=1)


GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGG...................................................................................................  <  NC_014034/235695‑235596


....................................................................................................GCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA  >  NC_014034/900797‑900893

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG