New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392448 =	217 (0.500)	56 (0.130)	17/190	29.7	0.23	intergenic (‑96/+47)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	2330184 =	161 (0.350)					intergenic (+159/+153)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GAGCGAAGCTTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCC.GCCGGGGGCTCCGCCCCCG....................................................................................................  <  NC_014034/392552‑392448 .....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCG  >  NC_014034/2330184‑2330283                                                                                                                                                                                                                                                                                            gcGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGG                               <  1:2999324/99‑1 (MQ=32)                                                                              cGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGG                              <  2:5736787/100‑1 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             <  2:5328759/101‑1 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             <  2:5528777/101‑1 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             <  1:8064079/101‑1 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             >  1:6796110/1‑101 (MQ=32)                                                                                 cgacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGG                           <  2:3396608/92‑1 (MQ=32)                                                                                  gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGGGGC                          >  1:1550653/9‑101 (MQ=17)                                                                                  gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGC                          >  1:7300841/9‑101 (MQ=32)                                                                                  gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGC                          <  1:4857334/93‑1 (MQ=32)                                                                                   gcccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  1:1339415/94‑1 (MQ=17)                                                                                   acccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  2:35082/94‑1 (MQ=32)                                                                                   acccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  1:5934745/94‑1 (MQ=32)                                                                                   acccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  1:2491985/94‑1 (MQ=32)                                                                                    cccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTT                        <  1:2573829/95‑1 (MQ=32)                                                                                     ccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       <  2:2384349/96‑1 (MQ=17)                                                                                     ccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       <  2:6308445/96‑1 (MQ=32)                                                                                     ccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       >  1:7465567/6‑101 (MQ=32)                                                                                     ccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       <  1:7463416/96‑1 (MQ=32)                                                                                     ccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGAATCACCGGCGGCCCGGGCGGCTTT                       <  2:4374494/96‑1 (MQ=17)                                                                                      cgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                      <  1:1876139/97‑1 (MQ=32)                                                                                      cgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                      <  2:664981/97‑1 (MQ=32)                                                                                      cgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                      >  1:2520852/5‑101 (MQ=32)                                                                                       gggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                     <  2:4905411/98‑1 (MQ=31)                                                                                       gggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                     <  2:8428962/98‑1 (MQ=31)                                                                                       gggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                     >  1:4876337/4‑101 (MQ=31)                                                                                       gggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCGTTCA                     >  1:7358714/4‑101 (MQ=14)                                                                                         gCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACC                   <  1:4893771/100‑1 (MQ=1)                                                                                          CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCT                  <  2:6414103/101‑1 (MQ=1)                                                                                          CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCT                  >  2:61668/1‑101 (MQ=1)                                                                                           gtGGGCTCCGCCCCCGCACCCGCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGGTCACCGGCGGCCCGGGCGCCTTTCACCTG                 <  2:5927235/99‑1 (MQ=0)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGGTTTCACCTG                 >  2:5152762/1‑101 (MQ=1)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG                 >  2:2240470/1‑101 (MQ=1)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG                 >  1:3251473/1‑101 (MQ=1)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG                 <  1:4970507/101‑1 (MQ=1)                                                                                            GGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGG                >  2:3125504/1‑101 (MQ=1)                                                                                            GGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGG                <  1:3408849/101‑1 (MQ=1)                                                                                              GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGG              >  2:2442547/1‑101 (MQ=1)                                                                                              GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGG              >  1:2044991/1‑101 (MQ=1)                                                                                               GCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGC             >  1:1864588/1‑101 (MQ=1)                                                                                                CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCGCCTGGGGCC            <  2:8197461/101‑1 (MQ=1)                                                                                                CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC            >  2:926224/1‑101 (MQ=1)                                                                                                CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC            <  2:3338735/101‑1 (MQ=1)                                                                                                CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC            >  1:7542780/1‑101 (MQ=1)                                                                                                 TCCGCCCCCGCCCCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA           <  2:3844652/101‑1 (MQ=1)                                                                                                 TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA           <  2:6556200/101‑1 (MQ=1)                                                                                                  CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          >  2:3622222/1‑101 (MQ=1)                                                                                                  CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          <  2:3512847/101‑1 (MQ=1)                                                                                                  CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          <  1:8890607/101‑1 (MQ=1)                                                                                                  CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          >  2:6384677/1‑101 (MQ=1)                                                                                                   CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAA         >  2:3653227/1‑101 (MQ=1)                                                                                                    GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        <  1:7714350/101‑1 (MQ=1)                                                                                                    GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        >  1:2738513/1‑101 (MQ=1)                                                                                                    GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        <  1:2616822/101‑1 (MQ=1)                                                                                                    GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        >  1:1802358/1‑101 (MQ=1)                                                                                                     CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGA       >  1:6494911/1‑101 (MQ=1)                                                                                                                                                                                                                GAGCGAAGCTTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCC.GCCGGGGGCTCCGCCCCCG....................................................................................................  <  NC_014034/392552‑392448 .....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCG  >  NC_014034/2330184‑2330283 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG