New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	408396 =	497 (1.100)	37 (0.080)	6/198	38.1	0.09	intergenic (+14/+134)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
	?	NC_014034	1640007 =	242 (0.530)					intergenic (+87/‑58)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

CCCCCGTCTTTGCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAG....................................................................................................  <  NC_014034/408497‑408396 .....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC  >  NC_014034/1640007‑1640106                                                                                                                                                                                                                       GCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAGCGCCCCCAGC                                                                                            >  1:1409490/1‑101 (MQ=38)             CTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAGAGCCCCCCGCC                                                                                           >  1:6417942/1‑101 (MQ=255)                                                                                     ggggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                   >  1:3753709/11‑101 (MQ=1)                                                                                     ggggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                   >  1:4669757/11‑101 (MQ=1)                                                                                      gggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAA                  >  2:6660280/10‑101 (MQ=1)                                                                                      gggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAA                  >  2:5186039/10‑101 (MQ=1)                                                                                      gggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAA                  >  1:6833183/10‑101 (MQ=1)                                                                                       ggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                 >  2:7167654/9‑101 (MQ=1)                                                                                       ggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                 >  2:6341586/9‑101 (MQ=1)                                                                                       ggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGAAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                 >  2:4430988/9‑101 (MQ=1)                                                                                        gggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                >  1:9019973/8‑101 (MQ=1)                                                                                        gggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                >  1:2532778/8‑101 (MQ=1)                                                                                        gggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                >  1:2895380/8‑101 (MQ=1)                                                                                          gcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGG              >  1:4755199/6‑101 (MQ=1)                                                                                           cccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGG             >  1:3331918/5‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  1:569194/4‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  1:702756/4‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  2:2067820/4‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  2:3298667/4‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  2:5476466/4‑101 (MQ=1)                                                                                             ggGGGGCCCGCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC           <  1:2095247/99‑1 (MQ=0)                                                                                             ggGGGGCCAGCCCCCCCCCCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC           <  2:3326771/99‑1 (MQ=0)                                                                                             cgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC           >  1:6838181/3‑101 (MQ=1)                                                                                             cgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC           >  2:609348/3‑101 (MQ=1)                                                                                              gGGGGGCGCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          <  1:443217/100‑1 (MQ=0)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:8860917/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:5499570/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:363259/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:1920138/2‑101 (MQ=1)                                                                                               GGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGA         >  2:7477829/1‑101 (MQ=1)                                                                                               GGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGA         >  1:5511059/1‑101 (MQ=1)                                                                                                GGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAG        >  1:6809132/1‑101 (MQ=1)                                                                                                 GGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAagatcggaa       >  1:5234125/1‑92 (MQ=0)                                                                                                  GGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAT      >  2:3893010/1‑101 (MQ=1)                                                                                                   GCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATC     >  1:7663735/1‑101 (MQ=1)                                                                                                    CAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCG    >  2:335136/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC   >  2:2777158/1‑101 (MQ=1)                                                                                                                                                                                                            CCCCCGTCTTTGCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAG....................................................................................................  <  NC_014034/408497‑408396 .....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC  >  NC_014034/1640007‑1640106 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG