New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	408498 =	275 (0.650)	67 (0.160)	3/186	40.0	0.16	intergenic (+116/+32)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
	?	NC_014034	2578421 =	434 (0.950)					intergenic (+30/+140)	purU/pgi	formyltetrahydrofolate deformylase/glucose‑6‑phosphate isomerase
Rejected: Position hash score below cutoff.

TGCCGCTGACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGC.....................................................................................................  <  NC_014034/408603‑408498 ...................................................................................................GGGGGGCGCTGCCCCCC.TCTTGCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCCGG  >  NC_014034/2578421‑2578520                                                                                                                                                                                                                         gCCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    <  1:5966296/100‑1 (MQ=1)         ACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGTCGCGATGCAACACGCCGGGCTGATCTGCGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    <  1:8259065/101‑1 (MQ=0)         ACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    <  2:4631092/101‑1 (MQ=1)         ACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    <  2:4370766/101‑1 (MQ=1)         ACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    >  1:1657951/1‑101 (MQ=1)         ACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    <  2:286459/101‑1 (MQ=1)         ACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCT                                                                                                    <  1:9005340/101‑1 (MQ=1)          CCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGGGCTG                                                                                                   >  2:3526437/1‑101 (MQ=14)          CCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTG                                                                                                   <  2:919644/101‑1 (MQ=1)          CCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTG                                                                                                   <  2:5267608/101‑1 (MQ=1)          CCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTG                                                                                                   <  1:1016137/101‑1 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGC                                                                                                  <  1:1230676/101‑1 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGC                                                                                                  <  2:4400447/101‑1 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGC                                                                                                  <  1:5359370/101‑1 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGC                                                                                                  >  2:2629416/1‑101 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGC                                                                                                  >  1:9170381/1‑101 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGC                                                                                                  <  1:6774786/101‑1 (MQ=1)           CGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGGCCTTTTGGCGACCTGTGCGGGGGGCTCTcc                                                                                                  >  2:2956761/1‑99 (MQ=1)            GAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCC                                                                                                 >  2:892829/1‑101 (MQ=1)            GAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCC                                                                                                 >  1:3007494/1‑101 (MQ=1)            GAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCC                                                                                                 <  1:3965359/101‑1 (MQ=1)            GAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCC                                                                                                 >  1:4329013/1‑101 (MQ=1)             AACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCC                                                                                                <  2:7496573/101‑1 (MQ=1)             AACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCC                                                                                                <  2:269194/101‑1 (MQ=1)             AACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCC                                                                                                <  2:1614772/101‑1 (MQ=1)             AACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCC                                                                                                >  1:8340630/1‑101 (MQ=1)               CTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGGGCTGCCCCC                                                                                              >  1:5467382/1‑101 (MQ=17)               CTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCC                                                                                              <  2:8147398/101‑1 (MQ=1)               CTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCC                                                                                              >  1:5618572/1‑101 (MQ=1)               CTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCC                                                                                              <  2:7102200/101‑1 (MQ=1)                TGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCC                                                                                             <  2:771086/101‑1 (MQ=1)                TGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCC                                                                                             <  2:4792977/101‑1 (MQ=1)                TGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCC                                                                                             >  2:6796195/1‑101 (MQ=1)                 GACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCg                                                                                            >  1:3209804/1‑100 (MQ=1)                 GACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCg                                                                                            >  2:8162687/1‑100 (MQ=1)                 GACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCg                                                                                            >  2:8073143/1‑100 (MQ=1)                 GACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCg                                                                                            <  1:1971812/101‑2 (MQ=1)                 GACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCg                                                                                            >  1:5448128/1‑100 (MQ=1)                  ACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTATGCGGGGGGCTCTGCCCCCCgt                                                                                           >  1:1407643/1‑99 (MQ=1)                   CCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtc                                                                                          <  1:7769806/101‑4 (MQ=1)                    CGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtct                                                                                         >  2:4293903/1‑97 (MQ=1)                    CGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtct                                                                                         <  1:5298306/101‑5 (MQ=1)                    CGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtct                                                                                         >  1:1234560/1‑97 (MQ=1)                    CGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtct                                                                                         <  2:6524326/101‑5 (MQ=1)                    CGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtct                                                                                         >  2:7903858/1‑97 (MQ=1)                    CGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtct                                                                                         <  1:8476447/101‑5 (MQ=1)                    CGACGGGACCAAGGCCGCGCATGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCC.Ttct                                                                                        <  1:7226280/101‑4 (MQ=0)                     GACGGGGCCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        <  1:780181/101‑6 (MQ=1)                     GACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGGGCTGCCCCCCccctt                                                                                        >  1:5946596/1‑96 (MQ=12)                     GACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        <  1:3688608/101‑6 (MQ=1)                     GACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        >  2:7186263/1‑96 (MQ=1)                     GACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        <  1:1309599/101‑6 (MQ=1)                     GACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        >  2:8031137/1‑96 (MQ=1)                     GACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        >  2:8131084/1‑96 (MQ=1)                     GACGGGAACAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCgtctt                                                                                        >  2:342892/1‑96 (MQ=1)                      gCGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  2:674208/100‑1 (MQ=1)                      gCGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  2:364926/100‑1 (MQ=1)                      ACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  1:4851815/101‑1 (MQ=1)                      ACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  2:3363892/101‑1 (MQ=1)                      ACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  1:7981554/101‑1 (MQ=1)                      ACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  1:728951/101‑1 (MQ=1)                      ACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       >  2:8472884/1‑101 (MQ=1)                      ACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTG                                                                                       <  1:6690660/101‑1 (MQ=1)                       CGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTGC                                                                                      <  2:2631855/101‑1 (MQ=1)                        GGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTGCt                                                                                     >  2:74305/1‑100 (MQ=1)                         GGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTGCtt                                                                                    <  1:8473264/101‑3 (MQ=1)                         GGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGCTCTGCCCCCCGTCTTGCtt                                                                                    <  1:6048800/101‑3 (MQ=1)                                                                                                                                                                                                                 TGCCGCTGACCGAACTGACCGACGGGACCAAGGCCGCGCTTGACGCCGCGATGCAACACGCCGGGCTGATCTGAGGTCGGTCCTTTTGGCGACCTGTGCGGGGGGC.....................................................................................................  <  NC_014034/408603‑408498 ...................................................................................................GGGGGGCGCTGCCCCCC.TCTTGCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCCGG  >  NC_014034/2578421‑2578520 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG