New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	510048 =	333 (0.770)	47 (0.110)	24/190	26.1	0.19	intergenic (+35/+152)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	= 1699955	76 (0.170)					intergenic (+28/+15)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

CTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/510149‑510048 .................................................................................................TCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGAAACAG  <  NC_014034/1699955‑1699856                                                                                                                                                                                                                     tcCCGAACCTCAAAAGCGCCTGGCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGagcat                                                                                              <  2:2940359/99‑6 (MQ=255)                                                                gtcccGGGGGGCCGGGGGCGCAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTC                                        <  2:2962940/96‑1 (MQ=0)                                                                acccgGGGGGCCCGGGGGCGGGGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTC                                        <  1:8691465/96‑1 (MQ=0)                                                                  ccgGGGGGGCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAG                                      <  2:9199233/98‑1 (MQ=0)                                                                   cgGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGT                                     <  1:3899365/99‑1 (MQ=1)                                                                     GGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTG                                   <  2:5667466/101‑1 (MQ=1)                                                                     GGGGGTCCGGGGGCGGACCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTG                                   <  2:7344090/101‑1 (MQ=1)                                                                          gcgGGGGGCGGCCCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  1:1383258/98‑1 (MQ=0)                                                                          gcgGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:8716255/98‑1 (MQ=1)                                                                          ctCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:2060394/99‑1 (MQ=1)                                                                          ccgGGGGGCGGCGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:8375979/98‑1 (MQ=0)                                                                            gGGGGGCGGACCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAG                            <  2:3967193/100‑1 (MQ=1)                                                                               ggcggtcGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATC                         <  2:2431022/94‑1 (MQ=0)                                                                               GGGCGGCGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATC                         <  1:2978695/101‑1 (MQ=1)                                                                               GGGCGGAGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATC                         <  2:6899510/101‑1 (MQ=1)                                                                                gggggccCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCG                        <  1:7938717/94‑1 (MQ=0)                                                                                gggcgccCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCG                        <  1:7182935/94‑1 (MQ=0)                                                                                GGCGGCGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCG                        <  2:8329058/101‑1 (MQ=0)                                                                                 GCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGG                       <  2:4871144/101‑1 (MQ=1)                                                                                  ggggcCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGC                      <  1:4955262/96‑1 (MQ=0)                                                                                    gcGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGG                    <  1:1211742/99‑1 (MQ=1)                                                                                    GAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGG                    >  1:5112229/1‑101 (MQ=1)                                                                                      GCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCT                  <  1:5252653/101‑1 (MQ=1)                                                                                        CCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCC                <  2:3768735/101‑1 (MQ=1)                                                                                        CCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCC                <  2:2424353/101‑1 (MQ=1)                                                                                         ccgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCC               <  1:6369927/98‑1 (MQ=1)                                                                                         ccgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCC               <  1:275126/98‑1 (MQ=1)                                                                                         CCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCC               <  2:2573763/101‑1 (MQ=1)                                                                                          cgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCT              <  1:394021/99‑1 (MQ=1)                                                                                          cgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCT              <  2:1557554/99‑1 (MQ=1)                                                                                           gGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTC             <  1:4403182/100‑1 (MQ=1)                                                                                            GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:1049023/101‑1 (MQ=1)                                                                                            GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:5295153/101‑1 (MQ=1)                                                                                            GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:1638189/101‑1 (MQ=1)                                                                                            GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:2042141/101‑1 (MQ=1)                                                                                            GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:261125/101‑1 (MQ=1)                                                                                             GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCA           <  2:2709237/101‑1 (MQ=1)                                                                                             GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCA           <  1:1470284/101‑1 (MQ=1)                                                                                             GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCCCCCCCCc           >  1:5049692/1‑100 (MQ=0)                                                                                              CGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAG          <  2:5548035/101‑1 (MQ=1)                                                                                              CGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCCCCAG          >  1:287534/1‑101 (MQ=1)                                                                                               GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGC         >  2:3280004/1‑101 (MQ=1)                                                                                               GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGC         >  2:8675211/1‑101 (MQ=1)                                                                                               GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCCCCCTCCCGC         >  1:5575189/1‑101 (MQ=0)                                                                                                 GTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGCGA       >  1:5821519/1‑101 (MQ=1)                                                                                                 GTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGCGA       >  2:762969/1‑101 (MQ=1)                                                                                                 GTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGA       >  1:6306643/1‑101 (MQ=1)                                                                                                                                                                                                            CTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/510149‑510048 .................................................................................................TCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGAAACAG  <  NC_014034/1699955‑1699856 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG