New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	510059 =	341 (0.740)	51 (0.110)	4/198	40.0	0.18	intergenic (+46/+141)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	1253894 =	137 (0.300)					intergenic (+52/+39)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

GCAGGGCCCCTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCC..................................................................................................  <  NC_014034/510158‑510059 ....................................................................................................GCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCT  >  NC_014034/1253894‑1253991                                                                                                                                                                                                        GCAGGGCCCCTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCCG                                                                                                   >  1:3008788/1‑101 (MQ=34) GCAGGGCCCCTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCCG                                                                                                   >  1:7079916/1‑101 (MQ=34) GCAGGGCCCCTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGACTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCCG                                                                                                   >  2:6811134/1‑101 (MQ=21)                                                                              GGGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCC                    >  2:1461199/1‑101 (MQ=32)                                                                              GGGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCC                    >  1:8775277/1‑101 (MQ=32)                                                                              GGGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCC                    >  1:6102354/1‑101 (MQ=32)                                                                               GGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCC                   >  2:3206749/1‑101 (MQ=32)                                                                               GGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCC                   >  2:3092275/1‑101 (MQ=32)                                                                               GGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCC                   >  1:8592566/1‑101 (MQ=32)                                                                                GGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCG                  >  1:5883511/1‑101 (MQ=32)                                                                                 GGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGG                 >  1:779195/1‑101 (MQ=32)                                                                                  gtgCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGT                >  1:3938966/4‑101 (MQ=32)                                                                                    gCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGC              >  1:6582211/2‑101 (MQ=11)                                                                                    gCGGGGGCGGA.CCCCC.CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGC              <  2:3658425/100‑1 (MQ=11)                                                                                     gGGGGGGGGGGCCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTG               <  1:7277513/100‑1 (MQ=2)                                                                                     CGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCG             >  1:8556298/1‑101 (MQ=1)                                                                                     CGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCG             >  1:3149522/1‑101 (MQ=1)                                                                                     CGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCG             >  2:2499002/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  2:5925086/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  1:6122192/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  2:8165954/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  1:8249661/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  1:2750882/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  2:3660782/1‑101 (MQ=1)                                                                                      GGGGGCGGAGCCCC..CGCCGGGACGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  1:9189978/1‑101 (MQ=1)                                                                                       GGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCT           <  2:7626893/101‑1 (MQ=1)                                                                                       GGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCT           >  2:5197046/1‑101 (MQ=1)                                                                                        GGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTG          >  1:2103702/1‑101 (MQ=1)                                                                                         GGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGC         >  2:1070970/1‑101 (MQ=1)                                                                                         GGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGC         >  2:5675098/1‑101 (MQ=1)                                                                                          ggggggaCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTG          <  1:5956682/94‑1 (MQ=0)                                                                                           ggcggaCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGC         <  2:8736253/95‑1 (MQ=1)                                                                                            cgcGCCCCCCGGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCG        <  2:3327251/98‑1 (MQ=0)                                                                                              ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  2:8340626/5‑101 (MQ=1)                                                                                              ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  1:2593928/5‑101 (MQ=1)                                                                                              ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  1:6252050/5‑101 (MQ=1)                                                                                              ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  2:4784073/5‑101 (MQ=1)                                                                                              ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  2:555277/5‑101 (MQ=1)                                                                                              ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCACTGCGAT      >  1:7077297/5‑101 (MQ=1)                                                                                              ggaCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      <  2:3454441/98‑1 (MQ=1)                                                                                              gcCCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      <  2:137421/99‑1 (MQ=1)                                                                                              gGCCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      <  1:9083315/100‑1 (MQ=1)                                                                                               ggCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATT     <  1:8770299/99‑1 (MQ=1)                                                                                               cCCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATT     <  2:6031137/100‑1 (MQ=1)                                                                                                ggCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    <  2:4986313/99‑1 (MQ=1)                                                                                                gCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    <  2:6545792/100‑1 (MQ=1)                                                                                                agCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    <  2:4816373/99‑1 (MQ=1)                                                                                                agCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    >  2:7017969/3‑101 (MQ=1)                                                                                                agCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    >  2:7903739/3‑101 (MQ=1)                                                                                                CCCCCGC.CCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTC   <  1:1877496/101‑1 (MQ=11)                                                                                                CCCCCG.GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTC   <  2:280372/101‑1 (MQ=1)                                                                                                CCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    <  2:475652/101‑1 (MQ=1)                                                                                                CCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    <  1:2702243/101‑1 (MQ=1)                                                                                                  CCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCT  <  2:6121955/101‑1 (MQ=1)                                                                                                                                                                                                        GCAGGGCCCCTTTTCAATTTCCGAACCTCAAAAGCGCCTGTCGGCTTTTTCTTGGCTCAAATACGCATCTGAAGTCAGGGGGTCCGGGGGCGGAGCCCCC..................................................................................................  <  NC_014034/510158‑510059 ....................................................................................................GCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCT  >  NC_014034/1253894‑1253991 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG