New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744645 =	276 (0.630)	51 (0.120)	27/190	24.7	0.22	intergenic (+30/+182)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1699955	76 (0.170)					intergenic (+28/+15)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

AAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/744749‑744645 ....................................................................................................TCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGAAACAG  <  NC_014034/1699955‑1699856                                                                                                                                                                                                                       GGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGCCCCGG                                                                                                  >  2:4195033/1‑101 (MQ=9)                                                         tgctgCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCG                                                  <  2:5587039/96‑1 (MQ=1)                                                         tgctgCAAATACCCCGGGGGCCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCG                                                  <  1:5602355/96‑1 (MQ=0)                                                          gctgCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGA                                                 <  2:6887425/97‑1 (MQ=0)                                                            tgCAAATATCCGGGGGGTCCGGGGGCGGAGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATG                                               <  2:5842828/99‑1 (MQ=0)                                                                   gTCCCGGGGGGCCGGGGGCGCAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTC                                        <  2:2962940/100‑1 (MQ=0)                                                                   acccgGGGGGCCCGGGGGCGGGGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTC                                        <  1:8691465/96‑1 (MQ=0)                                                                     ccgGGGGGGCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAG                                      <  2:9199233/98‑1 (MQ=0)                                                                      cgGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGT                                     <  1:3899365/99‑1 (MQ=1)                                                                        GGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTG                                   <  2:5667466/101‑1 (MQ=1)                                                                        GGGGGTCCGGGGGCGGACCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTG                                   <  2:7344090/101‑1 (MQ=1)                                                                             gcgGGGGGCGGCCCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  1:1383258/98‑1 (MQ=0)                                                                             gcgGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:8716255/98‑1 (MQ=1)                                                                             ctCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:2060394/99‑1 (MQ=1)                                                                             ccgGGGGGCGGCGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:8375979/98‑1 (MQ=0)                                                                               gGGGGGCGGACCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAG                            <  2:3967193/100‑1 (MQ=1)                                                                                  ggcggtcGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATC                         <  2:2431022/94‑1 (MQ=0)                                                                                  GGGCGGCGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATC                         <  1:2978695/101‑1 (MQ=1)                                                                                  GGGCGGAGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATC                         <  2:6899510/101‑1 (MQ=1)                                                                                   gggggccCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCG                        <  1:7938717/94‑1 (MQ=0)                                                                                   gggcgccCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCG                        <  1:7182935/94‑1 (MQ=0)                                                                                   GGCGGCGCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCG                        <  2:8329058/101‑1 (MQ=0)                                                                                    GCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGG                       <  2:4871144/101‑1 (MQ=1)                                                                                     ggggcCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGC                      <  1:4955262/96‑1 (MQ=0)                                                                                       gcGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGG                    <  1:1211742/99‑1 (MQ=1)                                                                                       GAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGG                    >  1:5112229/1‑101 (MQ=1)                                                                                         GCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCT                  <  1:5252653/101‑1 (MQ=1)                                                                                           CCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCC                <  2:2424353/101‑1 (MQ=1)                                                                                           CCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCC                <  2:3768735/101‑1 (MQ=1)                                                                                            ccgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCC               <  1:275126/98‑1 (MQ=1)                                                                                            ccgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCC               <  1:6369927/98‑1 (MQ=1)                                                                                            CCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCC               <  2:2573763/101‑1 (MQ=1)                                                                                             cgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCT              <  2:1557554/99‑1 (MQ=1)                                                                                             cgGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCT              <  1:394021/99‑1 (MQ=1)                                                                                              gGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTC             <  1:4403182/100‑1 (MQ=1)                                                                                               GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:261125/101‑1 (MQ=1)                                                                                               GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:2042141/101‑1 (MQ=1)                                                                                               GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:1638189/101‑1 (MQ=1)                                                                                               GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:5295153/101‑1 (MQ=1)                                                                                               GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCC            <  2:1049023/101‑1 (MQ=1)                                                                                                GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCA           <  2:2709237/101‑1 (MQ=1)                                                                                                GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCA           <  1:1470284/101‑1 (MQ=1)                                                                                                GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCCCCCCCCc           >  1:5049692/1‑100 (MQ=0)                                                                                                 CGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAG          <  2:5548035/101‑1 (MQ=1)                                                                                                 CGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCCCCAG          >  1:287534/1‑101 (MQ=1)                                                                                                  GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGC         >  2:3280004/1‑101 (MQ=1)                                                                                                  GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGC         >  2:8675211/1‑101 (MQ=1)                                                                                                  GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCCCCCTCCCGC         >  1:5575189/1‑101 (MQ=0)                                                                                                    GTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGCGA       >  2:762969/1‑101 (MQ=1)                                                                                                    GTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGCGA       >  1:5821519/1‑101 (MQ=1)                                                                                                    GTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGA       >  1:6306643/1‑101 (MQ=1)                                                                                                                                                                                                               AAAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/744749‑744645 ....................................................................................................TCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGAAACAG  <  NC_014034/1699955‑1699856 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG