New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 744671256 (0.590)57 (0.130) 17/190 29.7 0.21 intergenic (+56/+156) idi2/bchO isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
?NC_014034 2330184 = 161 (0.350)intergenic (+159/+153) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCC.GCCGGGGGCTCCG.CCCCCG....................................................................................................  >  NC_014034/744568‑744671
.....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCG  >  NC_014034/2330184‑2330283
                                                                                                                                                                                                              
             ACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCC.GCCGGGGGCTCCGCCCCCCGCCCCCCCGG                                                                                             >  1:1334554/1‑101 (MQ=0)
                                                                           gcGGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGG                               <  1:2999324/99‑1 (MQ=32)
                                                                            cGGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGG                              <  2:5736787/100‑1 (MQ=32)
                                                                             GGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             <  2:5528777/101‑1 (MQ=32)
                                                                             GGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             <  2:5328759/101‑1 (MQ=32)
                                                                             GGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             <  1:8064079/101‑1 (MQ=32)
                                                                             GGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                             >  1:6796110/1‑101 (MQ=32)
                                                                               cgacccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGG                           <  2:3396608/92‑1 (MQ=32)
                                                                                gacccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGGGGC                          >  1:1550653/9‑101 (MQ=17)
                                                                                gacccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGC                          >  1:7300841/9‑101 (MQ=32)
                                                                                gacccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGC                          <  1:4857334/93‑1 (MQ=32)
                                                                                 gcccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  1:1339415/94‑1 (MQ=17)
                                                                                 acccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  2:35082/94‑1 (MQ=32)
                                                                                 acccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  1:5934745/94‑1 (MQ=32)
                                                                                 acccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                         <  1:2491985/94‑1 (MQ=32)
                                                                                  cccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTT                        <  1:2573829/95‑1 (MQ=32)
                                                                                   ccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       <  2:2384349/96‑1 (MQ=17)
                                                                                   ccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       <  2:6308445/96‑1 (MQ=32)
                                                                                   ccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       <  1:7463416/96‑1 (MQ=32)
                                                                                   ccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                       >  1:7465567/6‑101 (MQ=32)
                                                                                   ccgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGAATCACCGGCGGCCCGGGCGGCTTT                       <  2:4374494/96‑1 (MQ=17)
                                                                                    cgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                      >  1:2520852/5‑101 (MQ=32)
                                                                                    cgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                      <  1:1876139/97‑1 (MQ=32)
                                                                                    cgggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                      <  2:664981/97‑1 (MQ=32)
                                                                                     gggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                     >  1:4876337/4‑101 (MQ=31)
                                                                                     gggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                     <  2:4905411/98‑1 (MQ=31)
                                                                                     gggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                     <  2:8428962/98‑1 (MQ=31)
                                                                                     gggCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCGTTCA                     >  1:7358714/4‑101 (MQ=14)
                                                                                       gCGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACC                   <  1:4893771/100‑1 (MQ=1)
                                                                                        CGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCT                  >  2:61668/1‑101 (MQ=1)
                                                                                        CGGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCT                  <  2:6414103/101‑1 (MQ=1)
                                                                                         gtGGGCTCCG.CCCCCGCACCCGCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGGTCACCGGCGGCCCGGGCGCCTTTCACCTG                 <  2:5927235/99‑1 (MQ=0)
                                                                                         GGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGGTTTCACCTG                 >  2:5152762/1‑101 (MQ=1)
                                                                                         GGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG                 >  2:2240470/1‑101 (MQ=1)
                                                                                         GGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG                 <  1:4970507/101‑1 (MQ=1)
                                                                                         GGGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG                 >  1:3251473/1‑101 (MQ=1)
                                                                                          GGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGG                >  2:3125504/1‑101 (MQ=1)
                                                                                          GGGGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGG                <  1:3408849/101‑1 (MQ=1)
                                                                                            GGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGG              >  2:2442547/1‑101 (MQ=1)
                                                                                            GGCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGG              >  1:2044991/1‑101 (MQ=1)
                                                                                             GCTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGC             >  1:1864588/1‑101 (MQ=1)
                                                                                              CTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCGCCTGGGGCC            <  2:8197461/101‑1 (MQ=1)
                                                                                              CTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC            >  2:926224/1‑101 (MQ=1)
                                                                                              CTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC            <  2:3338735/101‑1 (MQ=1)
                                                                                              CTCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC            >  1:7542780/1‑101 (MQ=1)
                                                                                               TCCG.CCCCCGCCCCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA           <  2:3844652/101‑1 (MQ=1)
                                                                                               TCCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA           <  2:6556200/101‑1 (MQ=1)
                                                                                                CCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          >  2:6384677/1‑101 (MQ=1)
                                                                                                CCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          <  1:8890607/101‑1 (MQ=1)
                                                                                                CCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          <  2:3512847/101‑1 (MQ=1)
                                                                                                CCG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA          >  2:3622222/1‑101 (MQ=1)
                                                                                                 CG.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAA         >  2:3653227/1‑101 (MQ=1)
                                                                                                  G.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        <  1:7714350/101‑1 (MQ=1)
                                                                                                  G.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        >  1:1802358/1‑101 (MQ=1)
                                                                                                  G.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        >  1:2738513/1‑101 (MQ=1)
                                                                                                  G.CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG        <  1:2616822/101‑1 (MQ=1)
                                                                                                    CCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGA       >  1:6494911/1‑101 (MQ=1)
                                                                                                                                                                                                              
TATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCC.GCCGGGGGCTCCG.CCCCCG....................................................................................................  >  NC_014034/744568‑744671
.....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCG  >  NC_014034/2330184‑2330283

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG