New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 744786 =73 (0.180)19 (0.050) 7/182 35.8 0.19 intergenic (+171/+41) idi2/bchO isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
?NC_014034 = 1732858 87 (0.190)intergenic (‑282/‑121) RCAP_rcc01601/tgt FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GCATCTGATCCACGAGGTTGCCGCGGATGGGCTTTCAGGGATGATTCTGGACTGGCTCGAGGGGTGAGATTTCGCCTCGGGCAGGCCCGAGGCGACCCGCGGGGGGCT....................................................................................................  <  NC_014034/744893‑744786
....................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCC  <  NC_014034/1732858‑1732759
                                                                                                                                                                                                                
                                                                      TTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTG                                       <  2:3870616/101‑1 (MQ=1)
                                                                       TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGCAAAGAAAGAAGGGCGTAGTTTGCCTAGGAAAAGCGGGGCCCTTGC                                      >  2:929356/1‑101 (MQ=0)
                                                                       TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGC                                      >  1:921973/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                     >  2:8963130/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                     >  1:7822077/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                     >  2:7740725/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAAAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCCTGCC                                     >  1:4492154/1‑101 (MQ=0)
                                                                          CCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCATATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTG                                   >  2:934971/1‑101 (MQ=1)
                                                                              GGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTCTCCTGTTGc                               >  2:6776328/1‑100 (MQ=0)
                                                                               GGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGAC                              >  1:3344173/1‑101 (MQ=1)
                                                                                  aaGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCG                           >  2:5392516/3‑101 (MQ=1)
                                                                                  aaGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCCGTTGACGCG                           >  1:6620178/3‑101 (MQ=1)
                                                                                        GAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGC                     >  2:2548398/1‑101 (MQ=1)
                                                                                         AGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGGATTTTGCCTAGGAAAAGCGGGGACCTTGCCTGTTGACGCGGGCGGCA                    >  2:4000740/1‑101 (MQ=0)
                                                                                            CGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGGATGC                 >  1:1064219/1‑101 (MQ=1)
                                                                                             GACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCG                >  1:5551296/1‑101 (MQ=1)
                                                                                                CCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCT             <  2:3766251/101‑1 (MQ=1)
                                                                                                 CGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTG            >  1:1814054/1‑101 (MQ=1)
                                                                                                  GCGGGGGGCTCCCCCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGC           <  2:2729958/101‑1 (MQ=0)
                                                                                                                                                                                                                
GCATCTGATCCACGAGGTTGCCGCGGATGGGCTTTCAGGGATGATTCTGGACTGGCTCGAGGGGTGAGATTTCGCCTCGGGCAGGCCCGAGGCGACCCGCGGGGGGCT....................................................................................................  <  NC_014034/744893‑744786
....................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCC  <  NC_014034/1732858‑1732759

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG